More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0462 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0462  binding-protein-dependent transport systems inner membrane component  100 
 
 
301 aa  582  1.0000000000000001e-165  Frankia sp. CcI3  Bacteria  normal  0.0599651  normal  0.184722 
 
 
-
 
NC_009921  Franean1_6155  binding-protein-dependent transport systems inner membrane component  78.52 
 
 
314 aa  422  1e-117  Frankia sp. EAN1pec  Bacteria  normal  normal  0.602871 
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  40.64 
 
 
290 aa  183  3e-45  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  38.55 
 
 
294 aa  175  8e-43  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  39.21 
 
 
307 aa  171  1e-41  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  39.21 
 
 
307 aa  171  1e-41  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  38.58 
 
 
319 aa  169  5e-41  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
312 aa  169  7e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
311 aa  166  2.9999999999999998e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_004311  BRA1182  sugar ABC transporter, permease protein, putative  35.74 
 
 
319 aa  164  2.0000000000000002e-39  Brucella suis 1330  Bacteria  normal  0.547049  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  37.77 
 
 
305 aa  164  2.0000000000000002e-39  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
294 aa  163  3e-39  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A1085  putative sugar ABC transporter, permease protein  35.74 
 
 
319 aa  163  3e-39  Brucella ovis ATCC 25840  Bacteria  normal  0.589946  n/a   
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
310 aa  163  3e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  35.36 
 
 
299 aa  162  7e-39  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0639  binding-protein-dependent transport systems inner membrane component  36.1 
 
 
305 aa  160  2e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.371496  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  34.4 
 
 
309 aa  159  7e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
315 aa  158  8e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
306 aa  158  9e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  38.02 
 
 
314 aa  157  2e-37  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
310 aa  156  3e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  35.34 
 
 
320 aa  155  6e-37  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
295 aa  155  7e-37  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  36.04 
 
 
299 aa  155  7e-37  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
292 aa  154  2e-36  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2801  binding-protein-dependent transport systems inner membrane component  32.39 
 
 
288 aa  151  1e-35  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.254018  n/a   
 
 
-
 
NC_010320  Teth514_0754  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
324 aa  150  2e-35  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000204062  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
312 aa  150  2e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  37.1 
 
 
291 aa  150  3e-35  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013521  Sked_07100  carbohydrate ABC transporter membrane protein  31.86 
 
 
318 aa  149  4e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.790586  normal 
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
320 aa  149  6e-35  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  35 
 
 
314 aa  149  6e-35  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  35.61 
 
 
288 aa  148  9e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  35.05 
 
 
309 aa  148  1.0000000000000001e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012793  GWCH70_1390  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
308 aa  148  1.0000000000000001e-34  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
296 aa  147  2.0000000000000003e-34  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  36.98 
 
 
287 aa  145  6e-34  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
294 aa  145  7.0000000000000006e-34  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
318 aa  145  8.000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
309 aa  145  9e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
316 aa  144  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2587  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
314 aa  144  2e-33  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.000137508  normal 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  33.21 
 
 
321 aa  144  2e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
294 aa  143  4e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  33.21 
 
 
294 aa  143  4e-33  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
320 aa  143  4e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  33.21 
 
 
294 aa  143  4e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29410  carbohydrate ABC transporter membrane protein  32.87 
 
 
322 aa  142  5e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  0.899558  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
306 aa  142  7e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
308 aa  142  7e-33  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
307 aa  142  8e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  35.93 
 
 
314 aa  142  8e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
318 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
318 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_009486  Tpet_0321  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
420 aa  141  9.999999999999999e-33  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  36.49 
 
 
310 aa  141  9.999999999999999e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0339  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
420 aa  141  9.999999999999999e-33  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4345  binding-protein-dependent transport systems inner membrane component  34.12 
 
 
319 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.0000915897 
 
 
-
 
NC_013947  Snas_3122  binding-protein-dependent transport systems inner membrane component  34.97 
 
 
305 aa  141  9.999999999999999e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.99861  hitchhiker  0.000381845 
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  30.88 
 
 
295 aa  140  1.9999999999999998e-32  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_009429  Rsph17025_3551  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
301 aa  140  1.9999999999999998e-32  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.963791  normal 
 
 
-
 
NC_010717  PXO_00881  ABC transporter sugar permease  33.68 
 
 
294 aa  141  1.9999999999999998e-32  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0244413  n/a   
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  33.84 
 
 
306 aa  140  3e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
317 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  34.67 
 
 
293 aa  140  3e-32  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  34.98 
 
 
306 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
308 aa  140  3e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
314 aa  140  3e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
293 aa  140  3e-32  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_014210  Ndas_0753  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
312 aa  140  3e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.308461  normal 
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
316 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1771  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
307 aa  140  3e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.2153  normal  0.0141948 
 
 
-
 
NC_011369  Rleg2_4016  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
319 aa  139  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
324 aa  139  3.9999999999999997e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
317 aa  139  4.999999999999999e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
313 aa  139  4.999999999999999e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_1449  lactose transport system permease protein  35.74 
 
 
290 aa  139  6e-32  Synechococcus sp. CC9605  Bacteria  normal  normal  0.0650773 
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  33.77 
 
 
311 aa  139  7e-32  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013946  Mrub_0044  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
304 aa  139  7.999999999999999e-32  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
293 aa  139  7.999999999999999e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  31.72 
 
 
301 aa  138  1e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_007513  Syncc9902_1051  lactose transport system permease protein  33.92 
 
 
306 aa  138  1e-31  Synechococcus sp. CC9902  Bacteria  normal  0.390377  n/a   
 
 
-
 
NC_013595  Sros_4987  binding-protein-dependent transport systems inner membrane component  37.13 
 
 
292 aa  138  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.753078  normal 
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
353 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  33.9 
 
 
286 aa  137  2e-31  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  31.65 
 
 
293 aa  137  2e-31  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4882  binding-protein-dependent transport systems inner membrane component  36.64 
 
 
313 aa  137  3.0000000000000003e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.115668  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  35.58 
 
 
283 aa  137  3.0000000000000003e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3792  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
285 aa  136  3.0000000000000003e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.168129  normal 
 
 
-
 
NC_013131  Caci_4696  binding-protein-dependent transport systems inner membrane component  36.64 
 
 
340 aa  136  3.0000000000000003e-31  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00310659  normal 
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  34.98 
 
 
322 aa  137  3.0000000000000003e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_013205  Aaci_0077  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
311 aa  137  3.0000000000000003e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  34.18 
 
 
286 aa  136  4e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  34.18 
 
 
280 aa  136  4e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  32.26 
 
 
328 aa  136  5e-31  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  36.24 
 
 
305 aa  136  5e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
309 aa  136  5e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  31.21 
 
 
315 aa  136  6.0000000000000005e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2009  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
291 aa  135  6.0000000000000005e-31  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  33.08 
 
 
308 aa  135  7.000000000000001e-31  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
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