More than 300 homologs were found in PanDaTox collection
for query gene Dshi_1747 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011369  Rleg2_0386  methylmalonate-semialdehyde dehydrogenase  72.14 
 
 
498 aa  758    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.433719  normal  0.0679471 
 
 
-
 
NC_012850  Rleg_0419  methylmalonate-semialdehyde dehydrogenase  72.34 
 
 
498 aa  758    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.214339  hitchhiker  0.00208567 
 
 
-
 
NC_010338  Caul_1409  methylmalonate-semialdehyde dehydrogenase  64.13 
 
 
498 aa  648    Caulobacter sp. K31  Bacteria  normal  0.671216  normal 
 
 
-
 
NC_004310  BR1832  methylmalonic acid semialdehyde dehydrogenase  71.54 
 
 
498 aa  736    Brucella suis 1330  Bacteria  normal  0.800551  n/a   
 
 
-
 
NC_009428  Rsph17025_1389  methylmalonate-semialdehyde dehydrogenase  86.57 
 
 
499 aa  863    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0324  methylmalonate-semialdehyde dehydrogenase  74.95 
 
 
498 aa  758    Sinorhizobium medicae WSM419  Bacteria  normal  0.948085  normal  0.128274 
 
 
-
 
NC_009719  Plav_1446  methylmalonate-semialdehyde dehydrogenase  67.33 
 
 
507 aa  704    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.494247  normal 
 
 
-
 
NC_008705  Mkms_1080  methylmalonate-semialdehyde dehydrogenase [acylating]  68.06 
 
 
506 aa  696    Mycobacterium sp. KMS  Bacteria  normal  normal  0.141199 
 
 
-
 
NC_010505  Mrad2831_3785  methylmalonate-semialdehyde dehydrogenase  71.08 
 
 
498 aa  708    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.361497  normal 
 
 
-
 
NC_012803  Mlut_02860  methylmalonate-semialdehyde dehydrogenase (acylating)  64.91 
 
 
508 aa  672    Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1765  methylmalonate-semialdehyde dehydrogenase (acylating)  71.74 
 
 
498 aa  738    Brucella ovis ATCC 25840  Bacteria  normal  0.118464  n/a   
 
 
-
 
NC_011004  Rpal_3940  methylmalonate-semialdehyde dehydrogenase  71.94 
 
 
498 aa  753    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.90589  n/a   
 
 
-
 
NC_007406  Nwi_2159  methylmalonate-semialdehyde dehydrogenase  69.9 
 
 
510 aa  712    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.360109 
 
 
-
 
NC_009511  Swit_0652  methylmalonate-semialdehyde dehydrogenase [acylating]  64.8 
 
 
502 aa  658    Sphingomonas wittichii RW1  Bacteria  normal  0.198803  normal 
 
 
-
 
NC_007493  RSP_2962  methylmalonate-semialdehyde dehydrogenase  86.97 
 
 
499 aa  854    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.216142  n/a   
 
 
-
 
NC_009338  Mflv_5010  methylmalonate-semialdehyde dehydrogenase  67.2 
 
 
506 aa  698    Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.352611 
 
 
-
 
NC_013441  Gbro_3902  methylmalonate-semialdehyde dehydrogenase  65.48 
 
 
513 aa  679    Gordonia bronchialis DSM 43247  Bacteria  normal  0.560303  n/a   
 
 
-
 
NC_008687  Pden_4479  methylmalonate-semialdehyde dehydrogenase  75.75 
 
 
499 aa  778    Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2071  methylmalonate-semialdehyde dehydrogenase [acylating]  72.93 
 
 
501 aa  710    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1068  methylmalonate-semialdehyde dehydrogenase  71.94 
 
 
498 aa  740    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2475  methylmalonate-semialdehyde dehydrogenase  72.14 
 
 
498 aa  754    Methylobacterium sp. 4-46  Bacteria  normal  0.55823  normal  0.220752 
 
 
-
 
NC_007778  RPB_2117  methylmalonate-semialdehyde dehydrogenase  72.14 
 
 
498 aa  758    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.591091 
 
 
-
 
NC_007802  Jann_1913  methylmalonate-semialdehyde dehydrogenase [acylating]  86.37 
 
 
499 aa  857    Jannaschia sp. CCS1  Bacteria  normal  0.815666  normal 
 
 
-
 
NC_007925  RPC_3095  methylmalonate-semialdehyde dehydrogenase  72.75 
 
 
498 aa  760    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.769898  normal  0.126836 
 
 
-
 
NC_007958  RPD_3302  methylmalonate-semialdehyde dehydrogenase  71.94 
 
 
537 aa  755    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.959449 
 
 
-
 
NC_007964  Nham_2559  methylmalonate-semialdehyde dehydrogenase  70.3 
 
 
497 aa  712    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2175  methylmalonate-semialdehyde dehydrogenase  71.74 
 
 
500 aa  732    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.210117  n/a   
 
 
-
 
NC_008044  TM1040_1106  methylmalonate-semialdehyde dehydrogenase [acylating]  76.95 
 
 
499 aa  794    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3070  methylmalonate-semialdehyde dehydrogenase  66.93 
 
 
506 aa  700    Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.274558  n/a   
 
 
-
 
NC_009508  Swit_5017  methylmalonate-semialdehyde dehydrogenase [acylating]  62.73 
 
 
499 aa  643    Sphingomonas wittichii RW1  Bacteria  normal  0.248363  normal  0.183907 
 
 
-
 
NC_008146  Mmcs_1064  methylmalonate-semialdehyde dehydrogenase [acylating]  68.06 
 
 
506 aa  696    Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3578  methylmalonate-semialdehyde dehydrogenase [acylating]  72.34 
 
 
498 aa  738    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.605326 
 
 
-
 
NC_008254  Meso_3319  methylmalonate-semialdehyde dehydrogenase [acylating]  72.49 
 
 
498 aa  755    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1747  acylating methylmalonate-semialdehyde dehydrogenase  100 
 
 
499 aa  1022    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.207366  normal  0.6572 
 
 
-
 
NC_009720  Xaut_2193  methylmalonate-semialdehyde dehydrogenase  73.69 
 
 
498 aa  739    Xanthobacter autotrophicus Py2  Bacteria  normal  0.365355  normal  0.620771 
 
 
-
 
NC_008347  Mmar10_2838  methylmalonate-semialdehyde dehydrogenase [acylating]  61.29 
 
 
499 aa  637    Maricaulis maris MCS10  Bacteria  normal  0.753586  normal 
 
 
-
 
NC_010581  Bind_0618  methylmalonate-semialdehyde dehydrogenase  70.36 
 
 
499 aa  719    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.634768  normal 
 
 
-
 
NC_009565  TBFG_10767  methylmalonate-semialdehyde dehydrogenase mmsA  67.13 
 
 
510 aa  711    Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0017569  normal  0.759995 
 
 
-
 
NC_011886  Achl_0630  methylmalonate-semialdehyde dehydrogenase  68.55 
 
 
499 aa  699    Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008726  Mvan_1362  methylmalonate-semialdehyde dehydrogenase  68.39 
 
 
534 aa  710    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0420  methylmalonate-semialdehyde dehydrogenase [acylating]  70.36 
 
 
499 aa  734    Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1091  methylmalonate-semialdehyde dehydrogenase [acylating]  68.06 
 
 
506 aa  696    Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0836  methylmalonate-semialdehyde dehydrogenase  73.95 
 
 
498 aa  762    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1609  methylmalonate-semialdehyde dehydrogenase  86.97 
 
 
499 aa  855    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0517581 
 
 
-
 
NC_010581  Bind_0175  methylmalonate-semialdehyde dehydrogenase  62 
 
 
509 aa  628  1e-179  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.262954  normal 
 
 
-
 
NC_009484  Acry_1791  methylmalonate-semialdehyde dehydrogenase  61.57 
 
 
508 aa  622  1e-177  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0855  methylmalonate-semialdehyde dehydrogenase [acylating]  60.52 
 
 
498 aa  618  1e-176  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.345114  n/a   
 
 
-
 
NC_011138  MADE_01513  methylmalonate-semialdehyde dehydrogenase, putative  59.32 
 
 
499 aa  614  1e-175  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4215  methylmalonate-semialdehyde dehydrogenase  62.1 
 
 
499 aa  614  1e-175  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2521  methylmalonate-semialdehyde dehydrogenase  61.37 
 
 
499 aa  616  1e-175  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3248  methylmalonate-semialdehyde dehydrogenase  63.31 
 
 
509 aa  614  9.999999999999999e-175  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1444  methylmalonate-semialdehyde dehydrogenase  61.85 
 
 
499 aa  613  9.999999999999999e-175  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0424754  normal 
 
 
-
 
NC_008048  Sala_3049  methylmalonate-semialdehyde dehydrogenase  62.93 
 
 
497 aa  613  9.999999999999999e-175  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.205238 
 
 
-
 
NC_010511  M446_1138  methylmalonate-semialdehyde dehydrogenase  62.3 
 
 
499 aa  608  1e-173  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1282  methylmalonate-semialdehyde dehydrogenase  61.65 
 
 
499 aa  610  1e-173  Methylobacterium extorquens PA1  Bacteria  normal  0.24316  normal 
 
 
-
 
NC_013422  Hneap_2368  methylmalonate-semialdehyde dehydrogenase  59.24 
 
 
504 aa  602  1.0000000000000001e-171  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0206  methylmalonate-semialdehyde dehydrogenase  58.92 
 
 
497 aa  598  1e-170  Pseudomonas aeruginosa PA7  Bacteria  normal  0.515725  n/a   
 
 
-
 
NC_008463  PA14_01600  putative aldehyde dehydrogenase  58.92 
 
 
497 aa  598  1e-170  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.510904  normal  0.728588 
 
 
-
 
NC_009654  Mmwyl1_1597  methylmalonate-semialdehyde dehydrogenase  55.89 
 
 
506 aa  595  1e-169  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2650  methylmalonate-semialdehyde dehydrogenase  55.89 
 
 
496 aa  591  1e-168  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000962307  normal 
 
 
-
 
NC_009439  Pmen_3694  methylmalonate-semialdehyde dehydrogenase [acylating]  57.95 
 
 
498 aa  588  1e-167  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1185  methylmalonate-semialdehyde dehydrogenase  54.91 
 
 
496 aa  589  1e-167  Shewanella baltica OS195  Bacteria  normal  0.773308  normal 
 
 
-
 
NC_009052  Sbal_1091  methylmalonate-semialdehyde dehydrogenase  55.11 
 
 
496 aa  588  1e-167  Shewanella baltica OS155  Bacteria  decreased coverage  0.00014498  n/a   
 
 
-
 
NC_010681  Bphyt_3917  methylmalonate-semialdehyde dehydrogenase  60.73 
 
 
512 aa  591  1e-167  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5814  methylmalonate-semialdehyde dehydrogenase  59.36 
 
 
507 aa  588  1e-167  Burkholderia phytofirmans PsJN  Bacteria  normal  0.404491  normal  0.463976 
 
 
-
 
NC_009092  Shew_0965  methylmalonate-semialdehyde dehydrogenase  55.91 
 
 
496 aa  590  1e-167  Shewanella loihica PV-4  Bacteria  normal  0.0738299  normal 
 
 
-
 
NC_007492  Pfl01_0686  methylmalonate-semialdehyde dehydrogenase  57.11 
 
 
497 aa  587  1e-166  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.000000335425  normal 
 
 
-
 
NC_011663  Sbal223_3204  methylmalonate-semialdehyde dehydrogenase  54.71 
 
 
496 aa  587  1e-166  Shewanella baltica OS223  Bacteria  normal  0.887195  normal 
 
 
-
 
NC_007951  Bxe_A0015  acylating methylmalonate-semialdehyde dehydrogenase  59.92 
 
 
512 aa  586  1e-166  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1151  methylmalonate-semialdehyde dehydrogenase  54.91 
 
 
496 aa  585  1e-166  Shewanella baltica OS185  Bacteria  normal  0.11811  n/a   
 
 
-
 
NC_007952  Bxe_B2023  acylating methylmalonate-semialdehyde dehydrogenase  58.95 
 
 
507 aa  586  1e-166  Burkholderia xenovorans LB400  Bacteria  normal  0.794475  normal  0.0299094 
 
 
-
 
NC_009438  Sputcn32_1083  methylmalonate-semialdehyde dehydrogenase  55.11 
 
 
496 aa  582  1.0000000000000001e-165  Shewanella putrefaciens CN-32  Bacteria  decreased coverage  0.0000148294  n/a   
 
 
-
 
NC_010678  Rpic_4274  methylmalonate-semialdehyde dehydrogenase  59.23 
 
 
507 aa  582  1.0000000000000001e-165  Ralstonia pickettii 12J  Bacteria  normal  0.463031  normal  0.914985 
 
 
-
 
NC_012857  Rpic12D_4384  methylmalonate-semialdehyde dehydrogenase  59.23 
 
 
507 aa  582  1.0000000000000001e-165  Ralstonia pickettii 12D  Bacteria  normal  normal  0.640119 
 
 
-
 
NC_009901  Spea_0935  methylmalonate-semialdehyde dehydrogenase  54.76 
 
 
501 aa  584  1.0000000000000001e-165  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0357372  n/a   
 
 
-
 
NC_009654  Mmwyl1_4044  methylmalonate-semialdehyde dehydrogenase  56.09 
 
 
498 aa  583  1.0000000000000001e-165  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1432  methylmalonate-semialdehyde dehydrogenase  55.71 
 
 
498 aa  581  1e-164  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0775  methylmalonate-semialdehyde dehydrogenase  55.91 
 
 
497 aa  579  1e-164  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  hitchhiker  0.00425927  n/a   
 
 
-
 
NC_009654  Mmwyl1_3662  methylmalonate-semialdehyde dehydrogenase  55.94 
 
 
496 aa  580  1e-164  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0249  methylmalonate-semialdehyde dehydrogenase [acylating]  58.95 
 
 
505 aa  580  1e-164  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1043  methylmalonate-semialdehyde dehydrogenase  55.71 
 
 
496 aa  581  1e-164  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0205992  normal  0.342071 
 
 
-
 
NC_008709  Ping_2399  methylmalonate-semialdehyde dehydrogenase  55.98 
 
 
502 aa  580  1e-164  Psychromonas ingrahamii 37  Bacteria  normal  0.169024  normal  0.676059 
 
 
-
 
NC_008345  Sfri_3023  methylmalonate-semialdehyde dehydrogenase  54.78 
 
 
499 aa  578  1e-164  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0588426  n/a   
 
 
-
 
NC_002947  PP_0597  methylmalonate-semialdehyde dehydrogenase  57.2 
 
 
497 aa  577  1.0000000000000001e-163  Pseudomonas putida KT2440  Bacteria  normal  0.0807275  normal 
 
 
-
 
NC_009074  BURPS668_3996  methylmalonate-semialdehyde dehydrogenase  59.31 
 
 
508 aa  575  1.0000000000000001e-163  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0679  methylmalonate-semialdehyde dehydrogenase  55.51 
 
 
497 aa  575  1.0000000000000001e-163  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.000513111  normal 
 
 
-
 
NC_010501  PputW619_4566  methylmalonate-semialdehyde dehydrogenase  56.71 
 
 
497 aa  576  1.0000000000000001e-163  Pseudomonas putida W619  Bacteria  hitchhiker  0.000000243063  hitchhiker  0.00796429 
 
 
-
 
NC_007651  BTH_I3333  methylmalonate-semialdehyde dehydrogenase  58.7 
 
 
508 aa  576  1.0000000000000001e-163  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1113  methylmalonate-semialdehyde dehydrogenase  54.31 
 
 
496 aa  577  1.0000000000000001e-163  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0000656277  normal 
 
 
-
 
NC_007963  Csal_1126  methylmalonate-semialdehyde dehydrogenase [acylating]  57.55 
 
 
496 aa  575  1.0000000000000001e-163  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2928  methylmalonate-semialdehyde dehydrogenase [acylating]  55.11 
 
 
496 aa  577  1.0000000000000001e-163  Shewanella sp. MR-4  Bacteria  normal  0.0250419  normal 
 
 
-
 
NC_008322  Shewmr7_3010  methylmalonate-semialdehyde dehydrogenase [acylating]  54.91 
 
 
496 aa  578  1.0000000000000001e-163  Shewanella sp. MR-7  Bacteria  normal  0.10059  normal 
 
 
-
 
NC_009512  Pput_0637  methylmalonate-semialdehyde dehydrogenase  57.2 
 
 
497 aa  577  1.0000000000000001e-163  Pseudomonas putida F1  Bacteria  hitchhiker  0.000000149078  normal  0.27415 
 
 
-
 
NC_008577  Shewana3_3107  methylmalonate-semialdehyde dehydrogenase [acylating]  54.91 
 
 
496 aa  577  1.0000000000000001e-163  Shewanella sp. ANA-3  Bacteria  normal  0.281488  normal 
 
 
-
 
NC_008836  BMA10229_A1611  methylmalonate-semialdehyde dehydrogenase  59.11 
 
 
508 aa  572  1.0000000000000001e-162  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2931  methylmalonate-semialdehyde dehydrogenase  59.11 
 
 
508 aa  572  1.0000000000000001e-162  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0642  methylmalonate-semialdehyde dehydrogenase  56.51 
 
 
497 aa  574  1.0000000000000001e-162  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00000000457228  decreased coverage  0.0000167809 
 
 
-
 
NC_010551  BamMC406_1351  methylmalonate-semialdehyde dehydrogenase  56.48 
 
 
506 aa  572  1.0000000000000001e-162  Burkholderia ambifaria MC40-6  Bacteria  normal  0.241244  normal 
 
 
-
 
NC_009076  BURPS1106A_4070  methylmalonate-semialdehyde dehydrogenase  59.11 
 
 
508 aa  572  1.0000000000000001e-162  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1432  methylmalonate-semialdehyde dehydrogenase  56.48 
 
 
506 aa  572  1.0000000000000001e-162  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
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