| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3107 |
|---|
| Symbol | |
|---|
| ID | 4477823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3726742 |
|---|
| End bp | 3728232 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639727711 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase [acylating] |
|---|
| Protein accession | YP_870737 |
|---|
| Protein GI | 117921545 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.281488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACAA TGACTCATTA TGTGAATGGC GAACACACCG CCGCCAGTAC AAGAAGCCAA
GAGATTTTCG AACCTGCGAC GGGAGAATGC CGAGGTCAGG TCTCCCTCGC GAGTCGCGAC
GAAGTCTCTG CCGCCATTGC TATCGCCAAA TCGGCCTTCG ACACTTGGTC ACAGGTAACG
CCCCTCAATC GTGCTCGTGT GCTATTTAAG TTTAAGGCGC TGGTCGAGCA ACATATGGAT
GAGCTGGCGC AGCTGATTAC CTTAGAGCAC GGCAAAGTGC TCGATGACGC CAGGGGAGAA
CTCATTCGTG GTCTCGAAGT CGTCGAATTT GCCTGTGGTA TCCCACACTT GCTCAAAGGG
GAACATACGG AGCAGGTAGG CGGTGGCGTC GACGCTTGGT CGGTCAATCA AGCTTTAGGT
GTTGTCGCAG GCATAGCGCC CTTTAACTTC CCCGTGATGG TTCCCATGTG GATGTTCCCA
ATCGCGATTG CCTGCGGTAA CACCTTTATT ATGAAGCCTT CGGAGAAAGA CCCAAGCGCA
GTGATGCGTA TTGCGGAATT ACTCACGCAG GCCGGGCTCC CTGCTGGGGT ATTTAATGTG
GTCAACGGTG ATAAAGAGGC CGTCGATACC CTGCTCAGCC ATGAAGATAT TCAAGCCGTT
AGCTTTGTCG GTTCAACGCC AATCGCCGAG TATATCTACA GCACAGCATC CAAACACGGT
AAACGGGTGC AGGCCCTCGG CGGCGCAAAA AACCATATGC TACTGATGCC GGATGCAGAT
TTAGATCAAG CCGTTAGTGC CCTCATGGGC GCCGCCTATG GCAGCGCAGG CGAGCGTTGT
ATGGCCATTT CAGTGGTATT GGCCGTGGGC GATGTGGGCG ATAAGCTGGT CGATAAATTA
TTACCGCAAA TTCAACAGTT AAAAGTGGGC AATGGCCTCA CCCCTGAGAT GGAAATGGGA
CCGTTGATCT CCCGCCAACA CCTCGCCAAA GTCACGGAAT TTGTCGACGC CGGTGTTAAA
GAAGGTGCGA CCTTAGTGGT GGACGGTCGC CAGTTAACCG TTGCCGACCA TCAGCAGGGG
TACTTCTTAG GCGCCTGTTT ATTCGATAAC GTCACCCCTG AGATGCGTAT TTACCGCGAA
GAAATCTTCG GTCCAGTGCT GTCGATTGTG CGGGTTAAGG ACTATGCCAG CGCACTGGCG
CTTATCAACC AGCATGAATT TGGTAATGGC ACCGCCATCT TTACCCAAAG CGGTGAGGCC
GCCAGACATT TTTGCCACCA TGTGCAGGTG GGTATGGTGG GCGTTAACGT GCCCATCCCT
GTGCCTATGG CCTTCCACTC CTTCGGTGGC TGGAAACGTT CGCTCTTTGG TCCCCTGCAT
ATGCATGGCC CTGACGGGGT ACGTTTTTAT ACCAAACGTA AAGCCATCAC GGCACGCTGG
CCCGTAGGCA AACAGACTCA AGCTGAGTTT GTTATGCCCA CCATGAAATA A
|
|---|
| Protein sequence | MLTMTHYVNG EHTAASTRSQ EIFEPATGEC RGQVSLASRD EVSAAIAIAK SAFDTWSQVT
PLNRARVLFK FKALVEQHMD ELAQLITLEH GKVLDDARGE LIRGLEVVEF ACGIPHLLKG
EHTEQVGGGV DAWSVNQALG VVAGIAPFNF PVMVPMWMFP IAIACGNTFI MKPSEKDPSA
VMRIAELLTQ AGLPAGVFNV VNGDKEAVDT LLSHEDIQAV SFVGSTPIAE YIYSTASKHG
KRVQALGGAK NHMLLMPDAD LDQAVSALMG AAYGSAGERC MAISVVLAVG DVGDKLVDKL
LPQIQQLKVG NGLTPEMEMG PLISRQHLAK VTEFVDAGVK EGATLVVDGR QLTVADHQQG
YFLGACLFDN VTPEMRIYRE EIFGPVLSIV RVKDYASALA LINQHEFGNG TAIFTQSGEA
ARHFCHHVQV GMVGVNVPIP VPMAFHSFGG WKRSLFGPLH MHGPDGVRFY TKRKAITARW
PVGKQTQAEF VMPTMK
|
|---|
| |