More than 300 homologs were found in PanDaTox collection
for query gene Caul_1409 on replicon NC_010338
Organism: Caulobacter sp. K31



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009505  BOV_1765  methylmalonate-semialdehyde dehydrogenase (acylating)  62.05 
 
 
498 aa  640    Brucella ovis ATCC 25840  Bacteria  normal  0.118464  n/a   
 
 
-
 
NC_014158  Tpau_3070  methylmalonate-semialdehyde dehydrogenase  63.49 
 
 
506 aa  658    Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.274558  n/a   
 
 
-
 
NC_009511  Swit_0652  methylmalonate-semialdehyde dehydrogenase [acylating]  77.11 
 
 
502 aa  796    Sphingomonas wittichii RW1  Bacteria  normal  0.198803  normal 
 
 
-
 
NC_004310  BR1832  methylmalonic acid semialdehyde dehydrogenase  62.25 
 
 
498 aa  641    Brucella suis 1330  Bacteria  normal  0.800551  n/a   
 
 
-
 
NC_008705  Mkms_1080  methylmalonate-semialdehyde dehydrogenase [acylating]  65.14 
 
 
506 aa  652    Mycobacterium sp. KMS  Bacteria  normal  normal  0.141199 
 
 
-
 
NC_009720  Xaut_2193  methylmalonate-semialdehyde dehydrogenase  63.98 
 
 
498 aa  657    Xanthobacter autotrophicus Py2  Bacteria  normal  0.365355  normal  0.620771 
 
 
-
 
NC_011369  Rleg2_0386  methylmalonate-semialdehyde dehydrogenase  63.05 
 
 
498 aa  671    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.433719  normal  0.0679471 
 
 
-
 
NC_009667  Oant_1068  methylmalonate-semialdehyde dehydrogenase  62.45 
 
 
498 aa  648    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0618  methylmalonate-semialdehyde dehydrogenase  64.85 
 
 
499 aa  678    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.634768  normal 
 
 
-
 
NC_009636  Smed_0324  methylmalonate-semialdehyde dehydrogenase  62.85 
 
 
498 aa  639    Sinorhizobium medicae WSM419  Bacteria  normal  0.948085  normal  0.128274 
 
 
-
 
NC_007406  Nwi_2159  methylmalonate-semialdehyde dehydrogenase  63.62 
 
 
510 aa  652    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.360109 
 
 
-
 
NC_009428  Rsph17025_1389  methylmalonate-semialdehyde dehydrogenase  64.06 
 
 
499 aa  638    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3785  methylmalonate-semialdehyde dehydrogenase  64.66 
 
 
498 aa  644    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.361497  normal 
 
 
-
 
NC_009485  BBta_3578  methylmalonate-semialdehyde dehydrogenase [acylating]  66.87 
 
 
498 aa  694    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.605326 
 
 
-
 
NC_007643  Rru_A2071  methylmalonate-semialdehyde dehydrogenase [acylating]  63.1 
 
 
501 aa  639    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2175  methylmalonate-semialdehyde dehydrogenase  64.39 
 
 
500 aa  667    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.210117  n/a   
 
 
-
 
NC_007778  RPB_2117  methylmalonate-semialdehyde dehydrogenase  65.46 
 
 
498 aa  698    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.591091 
 
 
-
 
NC_007794  Saro_0855  methylmalonate-semialdehyde dehydrogenase [acylating]  71.69 
 
 
498 aa  739    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.345114  n/a   
 
 
-
 
NC_007925  RPC_3095  methylmalonate-semialdehyde dehydrogenase  66.47 
 
 
498 aa  710    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.769898  normal  0.126836 
 
 
-
 
NC_010338  Caul_1409  methylmalonate-semialdehyde dehydrogenase  100 
 
 
498 aa  1020    Caulobacter sp. K31  Bacteria  normal  0.671216  normal 
 
 
-
 
NC_009338  Mflv_5010  methylmalonate-semialdehyde dehydrogenase  64.74 
 
 
506 aa  666    Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.352611 
 
 
-
 
NC_011004  Rpal_3940  methylmalonate-semialdehyde dehydrogenase  64.86 
 
 
498 aa  696    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.90589  n/a   
 
 
-
 
NC_007958  RPD_3302  methylmalonate-semialdehyde dehydrogenase  65.66 
 
 
537 aa  697    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.959449 
 
 
-
 
NC_007964  Nham_2559  methylmalonate-semialdehyde dehydrogenase  63.82 
 
 
497 aa  654    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_3049  methylmalonate-semialdehyde dehydrogenase  74.5 
 
 
497 aa  741    Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.205238 
 
 
-
 
NC_009719  Plav_1446  methylmalonate-semialdehyde dehydrogenase  72.89 
 
 
507 aa  770    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.494247  normal 
 
 
-
 
NC_009508  Swit_5017  methylmalonate-semialdehyde dehydrogenase [acylating]  70.68 
 
 
499 aa  735    Sphingomonas wittichii RW1  Bacteria  normal  0.248363  normal  0.183907 
 
 
-
 
NC_008146  Mmcs_1064  methylmalonate-semialdehyde dehydrogenase [acylating]  65.14 
 
 
506 aa  652    Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1091  methylmalonate-semialdehyde dehydrogenase [acylating]  65.14 
 
 
506 aa  652    Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3319  methylmalonate-semialdehyde dehydrogenase [acylating]  61.85 
 
 
498 aa  654    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2475  methylmalonate-semialdehyde dehydrogenase  65.06 
 
 
498 aa  689    Methylobacterium sp. 4-46  Bacteria  normal  0.55823  normal  0.220752 
 
 
-
 
NC_008347  Mmar10_2838  methylmalonate-semialdehyde dehydrogenase [acylating]  71.63 
 
 
499 aa  751    Maricaulis maris MCS10  Bacteria  normal  0.753586  normal 
 
 
-
 
NC_012850  Rleg_0419  methylmalonate-semialdehyde dehydrogenase  63.25 
 
 
498 aa  670    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.214339  hitchhiker  0.00208567 
 
 
-
 
NC_008726  Mvan_1362  methylmalonate-semialdehyde dehydrogenase  64.94 
 
 
534 aa  669    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10767  methylmalonate-semialdehyde dehydrogenase mmsA  64.43 
 
 
510 aa  670    Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0017569  normal  0.759995 
 
 
-
 
NC_013441  Gbro_3902  methylmalonate-semialdehyde dehydrogenase  62.85 
 
 
513 aa  642    Gordonia bronchialis DSM 43247  Bacteria  normal  0.560303  n/a   
 
 
-
 
NC_011138  MADE_01513  methylmalonate-semialdehyde dehydrogenase, putative  70.68 
 
 
499 aa  735    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0836  methylmalonate-semialdehyde dehydrogenase  62.45 
 
 
498 aa  654    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2962  methylmalonate-semialdehyde dehydrogenase  64.86 
 
 
499 aa  634  1e-180  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.216142  n/a   
 
 
-
 
NC_009049  Rsph17029_1609  methylmalonate-semialdehyde dehydrogenase  64.66 
 
 
499 aa  632  1e-180  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0517581 
 
 
-
 
NC_008541  Arth_0420  methylmalonate-semialdehyde dehydrogenase [acylating]  58.79 
 
 
499 aa  631  1e-180  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1747  acylating methylmalonate-semialdehyde dehydrogenase  64.13 
 
 
499 aa  630  1e-179  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.207366  normal  0.6572 
 
 
-
 
NC_007802  Jann_1913  methylmalonate-semialdehyde dehydrogenase [acylating]  62.93 
 
 
499 aa  622  1e-177  Jannaschia sp. CCS1  Bacteria  normal  0.815666  normal 
 
 
-
 
NC_010581  Bind_0175  methylmalonate-semialdehyde dehydrogenase  61.34 
 
 
509 aa  621  1e-177  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.262954  normal 
 
 
-
 
NC_009654  Mmwyl1_1597  methylmalonate-semialdehyde dehydrogenase  57.68 
 
 
506 aa  610  1e-173  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_02860  methylmalonate-semialdehyde dehydrogenase (acylating)  58.74 
 
 
508 aa  611  1e-173  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2399  methylmalonate-semialdehyde dehydrogenase  55.98 
 
 
502 aa  602  1.0000000000000001e-171  Psychromonas ingrahamii 37  Bacteria  normal  0.169024  normal  0.676059 
 
 
-
 
NC_009484  Acry_1791  methylmalonate-semialdehyde dehydrogenase  58.99 
 
 
508 aa  604  1.0000000000000001e-171  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4479  methylmalonate-semialdehyde dehydrogenase  59.24 
 
 
499 aa  599  1e-170  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1043  methylmalonate-semialdehyde dehydrogenase  57.43 
 
 
496 aa  598  1e-170  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0205992  normal  0.342071 
 
 
-
 
NC_013422  Hneap_2368  methylmalonate-semialdehyde dehydrogenase  57.17 
 
 
504 aa  596  1e-169  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2650  methylmalonate-semialdehyde dehydrogenase  56.83 
 
 
496 aa  592  1e-168  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000962307  normal 
 
 
-
 
NC_009708  YpsIP31758_2977  methylmalonate-semialdehyde dehydrogenase  55.42 
 
 
508 aa  593  1e-168  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0630  methylmalonate-semialdehyde dehydrogenase  58.38 
 
 
499 aa  594  1e-168  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010465  YPK_3049  methylmalonate-semialdehyde dehydrogenase  55.23 
 
 
508 aa  592  1e-168  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3023  methylmalonate-semialdehyde dehydrogenase  55.89 
 
 
499 aa  592  1e-168  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0588426  n/a   
 
 
-
 
NC_009092  Shew_0965  methylmalonate-semialdehyde dehydrogenase  57.03 
 
 
496 aa  592  1e-168  Shewanella loihica PV-4  Bacteria  normal  0.0738299  normal 
 
 
-
 
NC_010506  Swoo_1113  methylmalonate-semialdehyde dehydrogenase  56.22 
 
 
496 aa  590  1e-167  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0000656277  normal 
 
 
-
 
NC_010159  YpAngola_A1877  methylmalonate-semialdehyde dehydrogenase  55.23 
 
 
508 aa  590  1e-167  Yersinia pestis Angola  Bacteria  normal  hitchhiker  0.00719864 
 
 
-
 
NC_008044  TM1040_1106  methylmalonate-semialdehyde dehydrogenase [acylating]  57.63 
 
 
499 aa  590  1e-167  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1185  methylmalonate-semialdehyde dehydrogenase  55.82 
 
 
496 aa  589  1e-167  Shewanella baltica OS195  Bacteria  normal  0.773308  normal 
 
 
-
 
NC_010725  Mpop_4215  methylmalonate-semialdehyde dehydrogenase  58.38 
 
 
499 aa  589  1e-167  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2521  methylmalonate-semialdehyde dehydrogenase  58.79 
 
 
499 aa  588  1e-166  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3917  methylmalonate-semialdehyde dehydrogenase  57.75 
 
 
512 aa  586  1e-166  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3204  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
496 aa  588  1e-166  Shewanella baltica OS223  Bacteria  normal  0.887195  normal 
 
 
-
 
NC_009052  Sbal_1091  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
496 aa  587  1e-166  Shewanella baltica OS155  Bacteria  decreased coverage  0.00014498  n/a   
 
 
-
 
NC_012917  PC1_1334  methylmalonate-semialdehyde dehydrogenase  56.06 
 
 
503 aa  587  1e-166  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3003  methylmalonate-semialdehyde dehydrogenase  56.26 
 
 
503 aa  588  1e-166  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1151  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
496 aa  585  1e-166  Shewanella baltica OS185  Bacteria  normal  0.11811  n/a   
 
 
-
 
NC_009720  Xaut_3248  methylmalonate-semialdehyde dehydrogenase  58.79 
 
 
509 aa  583  1.0000000000000001e-165  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1444  methylmalonate-semialdehyde dehydrogenase  58.18 
 
 
499 aa  584  1.0000000000000001e-165  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0424754  normal 
 
 
-
 
NC_011365  Gdia_2416  methylmalonate-semialdehyde dehydrogenase  56.74 
 
 
497 aa  583  1.0000000000000001e-165  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1083  methylmalonate-semialdehyde dehydrogenase  55.82 
 
 
496 aa  583  1.0000000000000001e-165  Shewanella putrefaciens CN-32  Bacteria  decreased coverage  0.0000148294  n/a   
 
 
-
 
NC_008321  Shewmr4_2928  methylmalonate-semialdehyde dehydrogenase [acylating]  56.22 
 
 
496 aa  581  1.0000000000000001e-165  Shewanella sp. MR-4  Bacteria  normal  0.0250419  normal 
 
 
-
 
NC_009901  Spea_0935  methylmalonate-semialdehyde dehydrogenase  54.87 
 
 
501 aa  580  1e-164  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0357372  n/a   
 
 
-
 
NC_010172  Mext_1282  methylmalonate-semialdehyde dehydrogenase  57.98 
 
 
499 aa  581  1e-164  Methylobacterium extorquens PA1  Bacteria  normal  0.24316  normal 
 
 
-
 
NC_008577  Shewana3_3107  methylmalonate-semialdehyde dehydrogenase [acylating]  55.62 
 
 
496 aa  578  1e-164  Shewanella sp. ANA-3  Bacteria  normal  0.281488  normal 
 
 
-
 
NC_007951  Bxe_A0015  acylating methylmalonate-semialdehyde dehydrogenase  56.77 
 
 
512 aa  575  1.0000000000000001e-163  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3010  methylmalonate-semialdehyde dehydrogenase [acylating]  55.62 
 
 
496 aa  577  1.0000000000000001e-163  Shewanella sp. MR-7  Bacteria  normal  0.10059  normal 
 
 
-
 
NC_010511  M446_1138  methylmalonate-semialdehyde dehydrogenase  57.98 
 
 
499 aa  576  1.0000000000000001e-163  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1432  methylmalonate-semialdehyde dehydrogenase  54.51 
 
 
498 aa  573  1.0000000000000001e-162  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0775  methylmalonate-semialdehyde dehydrogenase  53.41 
 
 
497 aa  572  1.0000000000000001e-162  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  hitchhiker  0.00425927  n/a   
 
 
-
 
NC_007005  Psyr_0679  methylmalonate-semialdehyde dehydrogenase  53.41 
 
 
497 aa  572  1.0000000000000001e-162  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.000513111  normal 
 
 
-
 
NC_009654  Mmwyl1_3662  methylmalonate-semialdehyde dehydrogenase  54.12 
 
 
496 aa  574  1.0000000000000001e-162  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3343  methylmalonate-semialdehyde dehydrogenase  55.07 
 
 
503 aa  567  1e-160  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1126  methylmalonate-semialdehyde dehydrogenase [acylating]  55.13 
 
 
496 aa  567  1e-160  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2931  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
508 aa  563  1.0000000000000001e-159  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0206  methylmalonate-semialdehyde dehydrogenase  53.21 
 
 
497 aa  563  1.0000000000000001e-159  Pseudomonas aeruginosa PA7  Bacteria  normal  0.515725  n/a   
 
 
-
 
NC_009654  Mmwyl1_4044  methylmalonate-semialdehyde dehydrogenase  53.2 
 
 
498 aa  564  1.0000000000000001e-159  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3379  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
540 aa  563  1.0000000000000001e-159  Burkholderia mallei SAVP1  Bacteria  normal  0.25753  n/a   
 
 
-
 
NC_009076  BURPS1106A_4070  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
508 aa  563  1.0000000000000001e-159  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0686  methylmalonate-semialdehyde dehydrogenase  52.81 
 
 
497 aa  562  1.0000000000000001e-159  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.000000335425  normal 
 
 
-
 
NC_007651  BTH_I3333  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
508 aa  563  1.0000000000000001e-159  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6743  methylmalonate-semialdehyde dehydrogenase  56.54 
 
 
498 aa  564  1.0000000000000001e-159  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A1611  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
508 aa  563  1.0000000000000001e-159  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_1584  methylmalonate-semialdehyde dehydrogenase [acylating]  55.33 
 
 
498 aa  561  1.0000000000000001e-159  Haemophilus somnus 129PT  Bacteria  unclonable  0.00000121824  n/a   
 
 
-
 
NC_009484  Acry_3021  methylmalonate-semialdehyde dehydrogenase  58.84 
 
 
497 aa  561  1.0000000000000001e-159  Acidiphilium cryptum JF-5  Bacteria  normal  0.13552  n/a   
 
 
-
 
NC_008463  PA14_01600  putative aldehyde dehydrogenase  53.41 
 
 
497 aa  564  1.0000000000000001e-159  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.510904  normal  0.728588 
 
 
-
 
NC_009074  BURPS668_3996  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
508 aa  561  1.0000000000000001e-159  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2990  methylmalonate-semialdehyde dehydrogenase  55.62 
 
 
540 aa  563  1.0000000000000001e-159  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>