| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3049 |
|---|
| Symbol | |
|---|
| ID | 6088971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 3351278 |
|---|
| End bp | 3352804 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641598129 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001721775 |
|---|
| Protein GI | 170025270 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACGG TAGCGAATTT TATTAATGGC AAATGTGTTT TTAGTTGCGG CAACAGTATC
ACCAGCGGTA GCCCGCGCGC TCAGACAATC TTCAACTCAG CCACTGGCGA ACCTATCCGT
CAGGTGATGA TGAGCACTGC GCAGGAGACC GAGCAGGCCA TCACGGCGGC ACAACAAGCG
TTCGCCAGTT GGTCGCGCCA AGCGCCACTT AAACGCGCGC GCGTGATGTT CCGGTTTAAA
AGTTTGCTGG AGCAGCATCT GGACGCATTG GCACAGCTTA TTAGCGAAGA GCATGGAAAA
GTGTATTCCG ATGCCGTGGG TGAGCTAACC CGTGGTCTGG AAGTGGTGGA ATTCGCCTGT
GGCATTCCGC ACCTCCAAAA AGGCGAACAC TCAGCCAATG TTGGCACTGG CGTGGACAAT
CACTCGTTGA TGCAGCCGCT GGGGGTGTGC GTGGGGATTA CGCCCTTTAA TTTCCCCGCG
ATGGTACCGA TGTGGATGTT CCCGATAGCC CTGGCGACCG GGAATACTTT TGTACTGAAA
CCGTCCGAAA AGGATCCGTC GCTGGCTGTG CGGCTGGCAC AACTTTTAAC CGATGCCGGG
CTACCAGACG GTGTATTTAA CGTCGTACAG GGTGATAAAA CCGCGGTGGA CGTGCTGTTG
ACCGATCCGC GAGTGCAGGC AGTAAGCTTT GTCGGTTCTA CGCCGATTGC TGAATATATC
TACCAGACCG CATCGGCCCA CGGAAAACGC TGCCAGGCAC TGGGCGGGGC CAAAAACCAC
TGCATTCTGA TGCCGGACGC CGATATGGAC ATGGCGGCTA GCGCCATTAT GGGCGCGGCA
TACGGCGCGG CAGGGGAGCG CTGTATGGCG CTCTCGGTGG TGTTGGCGGT GGGGGATGAA
ACGGCAGATA ACCTTTGCGC ACGGCTGGAA CAGCAAATTA GCACGTTACG TGTTGGTCCG
GGGCTGGCAC AGGAGCCAGA AAACGACATG GGGCCGCTGA TCTCTGCGCC ACACCGCGCG
AAGGTATTGG GGTATATCGA CAGCGGCGTG GCCCAGAAGG CAACGTTGCG CATCGATGGC
CGTGGTTTGA AGGTGGCGGG CCATGAGCAA GGGTATTTTG TCGGGCCAAC GTTGTTCGAT
CATGTCACCC CGGCCATGAC CATTTATCAA GAAGAGATTT TCGGGCCGGT ACTTTCTGTG
GTACGTATCG CGGATTATCG CAGTGCGGTG GATCTGATCA ACCGTCATGA ATATGGTAAT
GGCACGGCTA TTTTCACCCG CGATGGGGGT ACCGCACGCC GCTTCTGTGA GGAGGTACAG
GTGGGGATGG TCGGCGTCAA CGTGCCGATC CCAGTACCGG TGGCGTTTCA TAGCTTCGGC
GGCTGGAAAC GTTCGATTTT CGGGCCGCTC AACGTGCATG GCAATGACGG GGTGCGCTTC
TACACGCGGA TGAAAACTAT CACTGCCCGC TGGCCAGAAG CACAGCATGA TCAGGGCGCG
GCATTCTCTA TGCCGACACT CGGTTGA
|
|---|
| Protein sequence | METVANFING KCVFSCGNSI TSGSPRAQTI FNSATGEPIR QVMMSTAQET EQAITAAQQA
FASWSRQAPL KRARVMFRFK SLLEQHLDAL AQLISEEHGK VYSDAVGELT RGLEVVEFAC
GIPHLQKGEH SANVGTGVDN HSLMQPLGVC VGITPFNFPA MVPMWMFPIA LATGNTFVLK
PSEKDPSLAV RLAQLLTDAG LPDGVFNVVQ GDKTAVDVLL TDPRVQAVSF VGSTPIAEYI
YQTASAHGKR CQALGGAKNH CILMPDADMD MAASAIMGAA YGAAGERCMA LSVVLAVGDE
TADNLCARLE QQISTLRVGP GLAQEPENDM GPLISAPHRA KVLGYIDSGV AQKATLRIDG
RGLKVAGHEQ GYFVGPTLFD HVTPAMTIYQ EEIFGPVLSV VRIADYRSAV DLINRHEYGN
GTAIFTRDGG TARRFCEEVQ VGMVGVNVPI PVPVAFHSFG GWKRSIFGPL NVHGNDGVRF
YTRMKTITAR WPEAQHDQGA AFSMPTLG
|
|---|
| |