| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3049 |
|---|
| Symbol | |
|---|
| ID | 4082898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3200419 |
|---|
| End bp | 3201912 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638011435 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_618086 |
|---|
| Protein GI | 103488525 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.205238 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACAGA TCGACCATCA CATTGTCGGC GGGGCCGCCG GTTCCGCCCG CTTCGGCGAC
GTCTTCGACC CCAATAATGG CGGCGTGCAG GCGCGGGTCG CGCTCGGCGA TCGCGCCATC
CTCGACCGCG CCGTGGCGGC GGCAAAGGCC GCGCAGCCCG CGTGGGCCGC GACCAACCCG
CAGCGCCGCG CGCGCGTGAT GTTCGATTTC AAGCGCCTCG TCGAAGCCAA TATGAACCAG
CTCGCCGAAA TGCTGTCGAG CGAACATGGC AAGGTGATCG CGGACTCGAA GGGCGACATC
CAGCGCGGCC TCGAAGTCAT CGAGTTCTGC TGCGGCATCC CGCATGTGTT GAAGGGCGAA
TATACGCAGG GTGCGGGCCC CGGCATCGAC GTCTATTCGA TGCGCCAGCC GGTCGGCATC
GGCGCGGGGA TCACGCCGTT CAACTTCCCC GCGATGATCC CGCTGTGGAT GGGGGGCGTC
GCGACCGCGG TGGGCAACGC CTTCATCCTG AAGCCCAGCG AGCGCGACCC GTCGGTGCCC
GTGCGCCTGT CGGAACTCTT CCTCGAAGCC GGGATGCCCG AGGGGATTTT CCAGACCGTC
CACGGCGACA AGGAAATGGT CGACGCGATC CTCGACCATC CCGACATCGG CGCGGTCAGC
TTCGTCGGTT CGTCGGACAT CGCGCATTAT GTCTATAATC GCGGCGTTGC GAACGGCAAG
CGCGTGCAGG CAATGGGCGG GGCCAAGAAC CATGGCATCG TCATGCCCGA CGCCGATCTC
GACCAGGTGG TGAACGACCT GACCGGCGCG GCCTTCGGCT CGGCGGGCGA ACGCTGCATG
GCGCTGCCCG TCGTCGTTCC CGTCGGTGAG GACACCGCGA ACCGCCTGCG CGCAAAACTC
GTCCCCGCGA TCGAGGCGCT GCGCGTCGGC GTGTCGACCG ATACCGAGGC GCATTACGGC
CCGGTGGTGA CAGAGGCGCA CAAGGAAAAG GTCGAAGGCT GGATCGCCAA ATGCGCCGAC
GAAGGTGCCG AGCTGGTCAT CGACGGCCGC GGCTTCACGC TGCAGGGCCA CGAAAAGGGC
TTCTTCGTCG GCCCGACGCT GTTCGACCAT GTCACCCCCG ACATGGAATC ATACAAGGAA
GAGATTTTCG GCCCCGTGCT CCAGATCGTC CGCGCGCCCG ATTTCGAAAC CGCGCTCGAA
CTGCCGTCGA AGCATCAATA TGGCAATGGC GTCGCGATCT TTACGCGCAA CGGCCACGCC
GCGCGCGAAT TTGCGGCGCG GGTCAATGTC GGCATGGTCG GCATCAACGT GCCGATCCCG
GTGCCGGTCG CCTATCACAG CTTCGGCGGC TGGAAACGGT CGGCGTTCGG CGACACCAAC
CAGCATGGCA TGGAAGGCGT GAAGTTCTGG ACCAAGGTGA AGACCGTGAC CGCGCGCTGG
CCCGACGGAT CGCCTGATGG CGGCAACGCC TTCGTTATCC CGACGATGGG TTGA
|
|---|
| Protein sequence | MRQIDHHIVG GAAGSARFGD VFDPNNGGVQ ARVALGDRAI LDRAVAAAKA AQPAWAATNP
QRRARVMFDF KRLVEANMNQ LAEMLSSEHG KVIADSKGDI QRGLEVIEFC CGIPHVLKGE
YTQGAGPGID VYSMRQPVGI GAGITPFNFP AMIPLWMGGV ATAVGNAFIL KPSERDPSVP
VRLSELFLEA GMPEGIFQTV HGDKEMVDAI LDHPDIGAVS FVGSSDIAHY VYNRGVANGK
RVQAMGGAKN HGIVMPDADL DQVVNDLTGA AFGSAGERCM ALPVVVPVGE DTANRLRAKL
VPAIEALRVG VSTDTEAHYG PVVTEAHKEK VEGWIAKCAD EGAELVIDGR GFTLQGHEKG
FFVGPTLFDH VTPDMESYKE EIFGPVLQIV RAPDFETALE LPSKHQYGNG VAIFTRNGHA
AREFAARVNV GMVGINVPIP VPVAYHSFGG WKRSAFGDTN QHGMEGVKFW TKVKTVTARW
PDGSPDGGNA FVIPTMG
|
|---|
| |