More than 300 homologs were found in PanDaTox collection
for query gene Nmar_0527 on replicon NC_010085
Organism: Nitrosopumilus maritimus SCM1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010085  Nmar_0527  cold-shock DNA-binding domain-containing protein  100 
 
 
63 aa  125  3e-28  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_3598  cold-shock DNA-binding domain-containing protein  59.09 
 
 
66 aa  75.1  0.0000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.851035  n/a   
 
 
-
 
NC_009012  Cthe_1853  cold-shock DNA-binding protein family protein  60.61 
 
 
66 aa  73.2  0.000000000001  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000550442  n/a   
 
 
-
 
NC_008709  Ping_1097  cold-shock DNA-binding domain-containing protein  59.38 
 
 
67 aa  72.4  0.000000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.24529  normal 
 
 
-
 
NC_013159  Svir_37160  cold-shock DNA-binding protein family  55.38 
 
 
67 aa  71.6  0.000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.0943216 
 
 
-
 
NC_007498  Pcar_0201  cold shock protein  54.55 
 
 
66 aa  71.6  0.000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000435671  n/a   
 
 
-
 
NC_010320  Teth514_2064  cold-shock DNA-binding domain-containing protein  59.09 
 
 
67 aa  71.2  0.000000000004  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000424325  n/a   
 
 
-
 
NC_008554  Sfum_1449  cold-shock DNA-binding domain-containing protein  53.85 
 
 
66 aa  71.2  0.000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  unclonable  0.000000494956  unclonable  0.00000584596 
 
 
-
 
NC_011772  BCG9842_B1369  hypothetical protein  56.06 
 
 
66 aa  70.9  0.000000000006  Bacillus cereus G9842  Bacteria  normal  normal  0.309276 
 
 
-
 
NC_009953  Sare_0310  cold-shock DNA-binding domain-containing protein  51.56 
 
 
67 aa  70.5  0.000000000007  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000124748 
 
 
-
 
NC_007912  Sde_3828  cold-shock DNA-binding protein family protein  54.55 
 
 
86 aa  70.5  0.000000000007  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0268  cold-shock DNA-binding domain-containing protein  51.56 
 
 
67 aa  70.5  0.000000000007  Salinispora tropica CNB-440  Bacteria  normal  hitchhiker  0.00110044 
 
 
-
 
NC_009943  Dole_3065  cold-shock DNA-binding domain-containing protein  53.97 
 
 
66 aa  70.1  0.000000000009  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000279167  n/a   
 
 
-
 
NC_009784  VIBHAR_05396  hypothetical protein  58.33 
 
 
69 aa  69.7  0.00000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_3299  cold-shock DNA-binding domain-containing protein  54.69 
 
 
66 aa  70.1  0.00000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.301257  normal 
 
 
-
 
NC_011725  BCB4264_A4990  cold shock protein CspD  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus cereus B4264  Bacteria  hitchhiker  0.00510931  n/a   
 
 
-
 
NC_013172  Bfae_10670  cold-shock DNA-binding protein family  56.92 
 
 
67 aa  69.3  0.00000000002  Brachybacterium faecium DSM 4810  Bacteria  hitchhiker  0.00582905  n/a   
 
 
-
 
NC_009664  Krad_3637  putative cold-shock DNA-binding domain protein  55.38 
 
 
67 aa  68.9  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_4972  cold shock protein CspD  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_5019  cold shock protein CspD  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus cereus ATCC 10987  Bacteria  normal  0.0351296  n/a   
 
 
-
 
NC_011658  BCAH187_A5001  cold shock protein CspD  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus cereus AH187  Bacteria  normal  0.219986  n/a   
 
 
-
 
NC_013422  Hneap_2338  cold-shock DNA-binding domain protein  59.68 
 
 
143 aa  68.9  0.00000000002  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00428193  n/a   
 
 
-
 
NC_005945  BAS4754  cold shock protein CspD  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000181  n/a   
 
 
-
 
NC_005957  BT9727_4592  cold shock protein  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00000000000232551  n/a   
 
 
-
 
NC_006274  BCZK4614  cold shock protein  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus cereus E33L  Bacteria  unclonable  0.0000000000000169422  n/a   
 
 
-
 
NC_007530  GBAA_5115  cold shock protein CspD  56.06 
 
 
66 aa  68.9  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00303936  n/a   
 
 
-
 
NC_008709  Ping_3098  cold-shock DNA-binding domain-containing protein  58.06 
 
 
69 aa  68.9  0.00000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.208356  normal  0.0206903 
 
 
-
 
NC_013216  Dtox_2963  cold-shock DNA-binding domain protein  57.81 
 
 
65 aa  68.9  0.00000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8911  putative cold-shock DNA-binding domain protein  50 
 
 
66 aa  69.3  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2532  cold-shock DNA-binding domain-containing protein  55.38 
 
 
65 aa  68.9  0.00000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.19716  normal  0.287944 
 
 
-
 
NC_008709  Ping_3095  cold-shock DNA-binding domain-containing protein  56.45 
 
 
69 aa  68.9  0.00000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0410712 
 
 
-
 
NC_013757  Gobs_0782  cold-shock DNA-binding domain protein  53.03 
 
 
66 aa  68.6  0.00000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.733249  n/a   
 
 
-
 
NC_009632  SaurJH1_1492  cold-shock protein DNA-binding  58.46 
 
 
66 aa  68.6  0.00000000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.0000192979  n/a   
 
 
-
 
NC_011886  Achl_0892  cold-shock DNA-binding domain protein  52.94 
 
 
68 aa  68.6  0.00000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_8123  cold-shock DNA-binding domain protein  51.56 
 
 
67 aa  68.2  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001460  cold shock protein CspE  55.74 
 
 
69 aa  68.6  0.00000000003  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1463  cold-shock DNA-binding domain-containing protein  58.46 
 
 
66 aa  68.6  0.00000000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.302037  n/a   
 
 
-
 
NC_011898  Ccel_2901  cold-shock DNA-binding domain protein  54.55 
 
 
66 aa  68.6  0.00000000003  Clostridium cellulolyticum H10  Bacteria  unclonable  0.0000000000581473  n/a   
 
 
-
 
NC_003909  BCE_5298  cold shock protein CspC  56.25 
 
 
67 aa  67.8  0.00000000005  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3614  cold-shock DNA-binding domain-containing protein  55.56 
 
 
70 aa  67.8  0.00000000005  Marinomonas sp. MWYL1  Bacteria  normal  0.44614  hitchhiker  0.00284754 
 
 
-
 
NC_011145  AnaeK_2630  cold-shock DNA-binding domain protein  53.85 
 
 
66 aa  67.8  0.00000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.681724  n/a   
 
 
-
 
NC_007498  Pcar_0778  cold shock proteins  50 
 
 
66 aa  67.8  0.00000000005  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000726747  n/a   
 
 
-
 
NC_008709  Ping_2543  cold-shock DNA-binding domain-containing protein  54.84 
 
 
69 aa  67.8  0.00000000005  Psychromonas ingrahamii 37  Bacteria  normal  0.754516  normal 
 
 
-
 
NC_011891  A2cp1_2724  cold-shock DNA-binding domain protein  53.85 
 
 
66 aa  67.8  0.00000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.720009  n/a   
 
 
-
 
NC_007760  Adeh_1235  cold-shock DNA-binding protein family protein  53.85 
 
 
66 aa  67.8  0.00000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1953  cold-shock DNA-binding domain-containing protein  56.45 
 
 
69 aa  67.8  0.00000000005  Psychromonas ingrahamii 37  Bacteria  normal  0.0846226  normal  0.0196408 
 
 
-
 
NC_007912  Sde_1909  cold-shock DNA-binding protein family protein  53.23 
 
 
69 aa  67.8  0.00000000005  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00215125  normal 
 
 
-
 
NC_011658  BCAH187_A5356  cold shock protein CspC  56.25 
 
 
67 aa  67.8  0.00000000005  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3733  cold-shock DNA-binding domain-containing protein  55.38 
 
 
68 aa  67.8  0.00000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.613597  n/a   
 
 
-
 
NC_008527  LACR_0174  cold-shock DNA-binding protein family protein  55.38 
 
 
65 aa  67.8  0.00000000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.0000215085  n/a   
 
 
-
 
NC_013946  Mrub_2290  cold-shock DNA-binding domain-containing protein  54.55 
 
 
68 aa  67.8  0.00000000005  Meiothermus ruber DSM 1279  Bacteria  normal  0.388252  hitchhiker  0.00970612 
 
 
-
 
NC_009077  Mjls_2334  cold-shock DNA-binding protein family protein  54.69 
 
 
67 aa  67.4  0.00000000006  Mycobacterium sp. JLS  Bacteria  normal  0.213577  normal  0.0207687 
 
 
-
 
NC_009524  PsycPRwf_0769  cold-shock DNA-binding domain-containing protein  56.06 
 
 
71 aa  67.4  0.00000000006  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.0000000056179  normal 
 
 
-
 
NC_007969  Pcryo_1475  cold-shock DNA-binding domain-containing protein  54.55 
 
 
71 aa  67.4  0.00000000006  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5171  cold-shock DNA-binding domain-containing protein  56.25 
 
 
126 aa  67.4  0.00000000006  Cupriavidus metallidurans CH34  Bacteria  normal  0.515643  normal  0.7858 
 
 
-
 
NC_008025  Dgeo_1006  cold-shock DNA-binding domain-containing protein  55.88 
 
 
89 aa  67.4  0.00000000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.644816  hitchhiker  0.000419725 
 
 
-
 
NC_008146  Mmcs_2295  cold-shock DNA-binding protein family protein  54.69 
 
 
67 aa  67.4  0.00000000006  Mycobacterium sp. MCS  Bacteria  normal  0.904352  n/a   
 
 
-
 
NC_009674  Bcer98_3497  cold-shock DNA-binding domain-containing protein  54.55 
 
 
66 aa  67.4  0.00000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.000000616798  n/a   
 
 
-
 
NC_008705  Mkms_2342  cold-shock DNA-binding protein family protein  54.69 
 
 
67 aa  67.4  0.00000000006  Mycobacterium sp. KMS  Bacteria  normal  normal  0.432439 
 
 
-
 
NC_009483  Gura_4019  cold-shock DNA-binding domain-containing protein  54.55 
 
 
66 aa  67.4  0.00000000007  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.000000000020604  n/a   
 
 
-
 
NC_009483  Gura_0958  cold-shock DNA-binding domain-containing protein  54.55 
 
 
68 aa  67  0.00000000007  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000177063  n/a   
 
 
-
 
NC_009456  VC0395_1092  cold shock DNA-binding domain-containing protein  55.74 
 
 
69 aa  67.4  0.00000000007  Vibrio cholerae O395  Bacteria  decreased coverage  0.000741991  n/a   
 
 
-
 
NC_002976  SERP0972  CSD family cold shock protein  56.06 
 
 
77 aa  67  0.00000000008  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2095  cold-shock DNA-binding domain-containing protein  55.38 
 
 
68 aa  67  0.00000000008  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00070927  normal  0.594986 
 
 
-
 
NC_008528  OEOE_1376  cold-shock DNA-binding protein family protein  54.55 
 
 
67 aa  67  0.00000000008  Oenococcus oeni PSU-1  Bacteria  normal  0.128629  n/a   
 
 
-
 
NC_013205  Aaci_2197  cold-shock DNA-binding domain protein  50.77 
 
 
66 aa  67  0.00000000009  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.000000106738  n/a   
 
 
-
 
NC_013947  Snas_4169  cold-shock DNA-binding domain-containing protein  56.92 
 
 
67 aa  67  0.00000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.206868  normal  0.740799 
 
 
-
 
NC_009513  Lreu_1505  cold-shock DNA-binding protein family protein  56.92 
 
 
66 aa  67  0.00000000009  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.248091  n/a   
 
 
-
 
NC_013441  Gbro_0573  Cold-shock protein DNA-binding protein  55.38 
 
 
67 aa  67  0.00000000009  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3156  cold shock-like transcription regulator protein  51.52 
 
 
67 aa  66.2  0.0000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.82157 
 
 
-
 
NC_013093  Amir_6800  cold-shock DNA-binding domain protein  50.77 
 
 
67 aa  66.6  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4269  cold-shock DNA-binding protein family protein  55.38 
 
 
67 aa  66.2  0.0000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5310  cold shock protein CspC  54.69 
 
 
65 aa  66.2  0.0000000001  Bacillus cereus B4264  Bacteria  normal  0.156889  n/a   
 
 
-
 
NC_005945  BAS5040  cold shock protein CspC  54.69 
 
 
67 aa  66.2  0.0000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4870  cold shock protein  54.69 
 
 
67 aa  66.2  0.0000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4885  cold shock protein  54.69 
 
 
67 aa  66.2  0.0000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0942  cold-shock DNA-binding protein family protein  53.03 
 
 
71 aa  66.6  0.0000000001  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3612  cold-shock DNA-binding domain-containing protein  55 
 
 
68 aa  66.2  0.0000000001  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.00000433441  n/a   
 
 
-
 
NC_010001  Cphy_0644  cold-shock DNA-binding domain-containing protein  55.38 
 
 
66 aa  66.2  0.0000000001  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000000253244  n/a   
 
 
-
 
NC_007498  Pcar_0372  cold shock protein  50 
 
 
66 aa  66.6  0.0000000001  Pelobacter carbinolicus DSM 2380  Bacteria  unclonable  2.69681e-23  n/a   
 
 
-
 
NC_007498  Pcar_2806  cold shock proteins  52.31 
 
 
85 aa  66.6  0.0000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  5.72104e-21  n/a   
 
 
-
 
NC_009718  Fnod_0028  cold-shock DNA-binding domain-containing protein  54.84 
 
 
66 aa  66.2  0.0000000001  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.00000000000670362  n/a   
 
 
-
 
NC_013093  Amir_1042  cold-shock DNA-binding domain protein  53.85 
 
 
68 aa  66.2  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5424  cold shock protein CspC  54.69 
 
 
65 aa  66.2  0.0000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.491326  n/a   
 
 
-
 
NC_011772  BCG9842_B5647  cold shock protein CspC  54.69 
 
 
65 aa  66.2  0.0000000001  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000135799 
 
 
-
 
NC_008009  Acid345_1523  cold-shock DNA-binding protein family protein  54.69 
 
 
66 aa  66.6  0.0000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.478782  normal  0.638647 
 
 
-
 
NC_013510  Tcur_0803  cold-shock DNA-binding domain protein  48.44 
 
 
66 aa  66.2  0.0000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1881  cold-shock DNA-binding domain-containing protein  54.1 
 
 
69 aa  66.6  0.0000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.0395263  normal  0.068791 
 
 
-
 
NC_010184  BcerKBAB4_4985  cold-shock DNA-binding domain-containing protein  54.69 
 
 
67 aa  66.2  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008505  LACR_C47  cold-shock DNA-binding protein family protein  54.55 
 
 
66 aa  66.2  0.0000000001  Lactococcus lactis subsp. cremoris SK11  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_5280  cold shock protein CspC  54.69 
 
 
67 aa  66.2  0.0000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000584465 
 
 
-
 
NC_008554  Sfum_0567  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  66.2  0.0000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000164882  normal  0.415354 
 
 
-
 
NC_009483  Gura_3670  cold-shock DNA-binding domain-containing protein  51.52 
 
 
66 aa  66.2  0.0000000002  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000254143  n/a   
 
 
-
 
NC_002977  MCA0792  cold shock protein  53.23 
 
 
69 aa  65.9  0.0000000002  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.000000912185  n/a   
 
 
-
 
NC_008709  Ping_0279  cold-shock DNA-binding domain-containing protein  52.46 
 
 
68 aa  65.9  0.0000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0890  cold-shock DNA-binding domain protein  59.65 
 
 
67 aa  65.9  0.0000000002  Atopobium parvulum DSM 20469  Bacteria  hitchhiker  0.0000324148  normal  0.0824036 
 
 
-
 
NC_008709  Ping_0755  cold-shock DNA-binding domain-containing protein  53.33 
 
 
68 aa  66.2  0.0000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0260  cold-shock DNA-binding protein family protein  53.85 
 
 
67 aa  65.9  0.0000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2158  cold-shock DNA-binding domain-containing protein  54.1 
 
 
69 aa  66.2  0.0000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_0880  cold shock protein  53.03 
 
 
66 aa  65.5  0.0000000002  Streptococcus thermophilus LMD-9  Bacteria  decreased coverage  0.000035682  n/a   
 
 
-
 
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