More than 300 homologs were found in PanDaTox collection
for query gene Pcar_0201 on replicon NC_007498
Organism: Pelobacter carbinolicus DSM 2380



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007498  Pcar_0201  cold shock protein  100 
 
 
66 aa  136  8.999999999999999e-32  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000435671  n/a   
 
 
-
 
NC_007498  Pcar_0372  cold shock protein  72.73 
 
 
66 aa  107  6e-23  Pelobacter carbinolicus DSM 2380  Bacteria  unclonable  2.69681e-23  n/a   
 
 
-
 
NC_007498  Pcar_0778  cold shock proteins  71.21 
 
 
66 aa  103  8e-22  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000726747  n/a   
 
 
-
 
NC_007498  Pcar_2806  cold shock proteins  73.85 
 
 
85 aa  103  1e-21  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  5.72104e-21  n/a   
 
 
-
 
NC_013522  Taci_0982  cold-shock DNA-binding domain protein  71.43 
 
 
83 aa  99.8  1e-20  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  unclonable  0.000000000734957  n/a   
 
 
-
 
NC_013757  Gobs_0782  cold-shock DNA-binding domain protein  74.6 
 
 
66 aa  99.4  1e-20  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.733249  n/a   
 
 
-
 
NC_011145  AnaeK_2630  cold-shock DNA-binding domain protein  67.69 
 
 
66 aa  99.4  2e-20  Anaeromyxobacter sp. K  Bacteria  normal  0.681724  n/a   
 
 
-
 
NC_007517  Gmet_0237  cold-shock DNA-binding protein family protein  65.15 
 
 
66 aa  99  2e-20  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000000692047  hitchhiker  0.0000000000000296416 
 
 
-
 
NC_009675  Anae109_2532  cold-shock DNA-binding domain-containing protein  66.15 
 
 
65 aa  99  2e-20  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.19716  normal  0.287944 
 
 
-
 
NC_007760  Adeh_1235  cold-shock DNA-binding protein family protein  67.69 
 
 
66 aa  99.4  2e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2724  cold-shock DNA-binding domain protein  67.69 
 
 
66 aa  99.4  2e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.720009  n/a   
 
 
-
 
NC_009664  Krad_3637  putative cold-shock DNA-binding domain protein  75 
 
 
67 aa  98.6  3e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8123  cold-shock DNA-binding domain protein  73.02 
 
 
67 aa  98.2  3e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1523  cold-shock DNA-binding protein family protein  68.75 
 
 
66 aa  97.8  4e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.478782  normal  0.638647 
 
 
-
 
NC_012918  GM21_0658  cold-shock DNA-binding domain protein  69.23 
 
 
66 aa  97.4  6e-20  Geobacter sp. M21  Bacteria  n/a    hitchhiker  8.18008e-25 
 
 
-
 
NC_011146  Gbem_0645  cold-shock DNA-binding domain protein  69.23 
 
 
66 aa  97.4  6e-20  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000155303  n/a   
 
 
-
 
NC_012918  GM21_1502  cold-shock DNA-binding domain protein  69.7 
 
 
68 aa  97.4  6e-20  Geobacter sp. M21  Bacteria  n/a    normal  0.683183 
 
 
-
 
NC_008528  OEOE_1376  cold-shock DNA-binding protein family protein  69.23 
 
 
67 aa  97.4  6e-20  Oenococcus oeni PSU-1  Bacteria  normal  0.128629  n/a   
 
 
-
 
NC_011146  Gbem_2739  cold-shock DNA-binding domain protein  69.7 
 
 
68 aa  97.1  7e-20  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00000080188  n/a   
 
 
-
 
NC_009718  Fnod_0028  cold-shock DNA-binding domain-containing protein  67.74 
 
 
66 aa  97.1  7e-20  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.00000000000670362  n/a   
 
 
-
 
NC_009943  Dole_3065  cold-shock DNA-binding domain-containing protein  63.64 
 
 
66 aa  96.7  9e-20  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000279167  n/a   
 
 
-
 
NC_013131  Caci_1466  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  96.7  9e-20  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00122582  normal 
 
 
-
 
NC_013595  Sros_8911  putative cold-shock DNA-binding domain protein  66.67 
 
 
66 aa  96.7  9e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0207  cold-shock domain-contain protein  62.12 
 
 
66 aa  96.3  1e-19  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.0000092661  n/a   
 
 
-
 
NC_012669  Bcav_2426  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  95.9  1e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.386206  normal  0.184038 
 
 
-
 
NC_009380  Strop_0268  cold-shock DNA-binding domain-containing protein  66.67 
 
 
67 aa  96.7  1e-19  Salinispora tropica CNB-440  Bacteria  normal  hitchhiker  0.00110044 
 
 
-
 
NC_010320  Teth514_2064  cold-shock DNA-binding domain-containing protein  65.15 
 
 
67 aa  96.3  1e-19  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000424325  n/a   
 
 
-
 
NC_007498  Pcar_2370  cold shock proteins  62.12 
 
 
66 aa  96.3  1e-19  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  6.71289e-19  n/a   
 
 
-
 
NC_009953  Sare_0310  cold-shock DNA-binding domain-containing protein  66.67 
 
 
67 aa  96.7  1e-19  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000124748 
 
 
-
 
NC_010814  Glov_3009  cold-shock DNA-binding domain protein  62.12 
 
 
66 aa  96.3  1e-19  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000000338094  n/a   
 
 
-
 
NC_009483  Gura_3711  cold-shock DNA-binding domain-containing protein  68.18 
 
 
66 aa  96.3  1e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000509741  n/a   
 
 
-
 
NC_008709  Ping_2158  cold-shock DNA-binding domain-containing protein  64.62 
 
 
69 aa  96.3  1e-19  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0191  cold-shock domain-contain protein  60.61 
 
 
66 aa  95.9  2e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1896  cold-shock DNA-binding domain protein  68.75 
 
 
67 aa  95.5  2e-19  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.385975  n/a   
 
 
-
 
NC_009513  Lreu_1505  cold-shock DNA-binding protein family protein  67.69 
 
 
66 aa  95.9  2e-19  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.248091  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3598  cold-shock DNA-binding domain-containing protein  65.15 
 
 
66 aa  95.5  2e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.851035  n/a   
 
 
-
 
NC_009483  Gura_4380  cold-shock DNA-binding domain-containing protein  68.18 
 
 
66 aa  95.9  2e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000149248  n/a   
 
 
-
 
NC_013522  Taci_0387  cold-shock DNA-binding domain protein  65.62 
 
 
67 aa  95.9  2e-19  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  unclonable  0.000000000327706  n/a   
 
 
-
 
NC_013947  Snas_6113  cold-shock DNA-binding domain-containing protein  65.15 
 
 
66 aa  95.5  2e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1905  cold shock domain-contain protein  70.77 
 
 
66 aa  95.1  3e-19  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00000974395  n/a   
 
 
-
 
NC_003909  BCE_5298  cold shock protein CspC  63.08 
 
 
67 aa  94.7  3e-19  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0174  cold-shock DNA-binding protein family protein  61.54 
 
 
65 aa  95.1  3e-19  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.0000215085  n/a   
 
 
-
 
NC_010001  Cphy_0555  cold-shock DNA-binding domain-containing protein  62.12 
 
 
66 aa  95.1  3e-19  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000000705321  n/a   
 
 
-
 
NC_011658  BCAH187_A5356  cold shock protein CspC  63.08 
 
 
67 aa  94.7  3e-19  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4020  cold-shock DNA-binding domain-containing protein  63.64 
 
 
66 aa  94.7  4e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000184454  n/a   
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  94.4  4e-19  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3621  cold-shock DNA-binding domain-containing protein  60.61 
 
 
69 aa  94.7  4e-19  Marinomonas sp. MWYL1  Bacteria  normal  0.0652324  hitchhiker  0.000182164 
 
 
-
 
NC_007404  Tbd_0855  cold-shock DNA-binding protein family protein  70.31 
 
 
68 aa  94.7  4e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.563444  normal  0.445485 
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  94.4  4e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0340  cold-shock DNA-binding protein family protein  63.64 
 
 
66 aa  94.4  4e-19  Geobacter metallireducens GS-15  Bacteria  unclonable  3.6796e-20  unclonable  6.2466300000000005e-24 
 
 
 
NC_007517  Gmet_1266  cold-shock DNA-binding protein family protein  67.69 
 
 
66 aa  94.4  4e-19  Geobacter metallireducens GS-15  Bacteria  hitchhiker  2.7573e-18  decreased coverage  0.00000000000100442 
 
 
-
 
NC_011772  BCG9842_B1369  hypothetical protein  66.15 
 
 
66 aa  94.4  4e-19  Bacillus cereus G9842  Bacteria  normal  normal  0.309276 
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  70.15 
 
 
67 aa  94.4  4e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_014212  Mesil_1072  cold-shock DNA-binding domain protein  67.69 
 
 
68 aa  94.4  5e-19  Meiothermus silvanus DSM 9946  Bacteria  unclonable  0.0000000253624  normal 
 
 
-
 
NC_008740  Maqu_3612  cold-shock DNA-binding domain-containing protein  66.67 
 
 
68 aa  94.4  5e-19  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.00000433441  n/a   
 
 
-
 
NC_009483  Gura_0958  cold-shock DNA-binding domain-containing protein  63.64 
 
 
68 aa  94.4  5e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000177063  n/a   
 
 
-
 
NC_009483  Gura_3670  cold-shock DNA-binding domain-containing protein  64.62 
 
 
66 aa  94.4  5e-19  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000254143  n/a   
 
 
-
 
NC_013510  Tcur_2880  cold-shock DNA-binding domain protein  69.23 
 
 
68 aa  94  5e-19  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000807571  n/a   
 
 
-
 
NC_008554  Sfum_3214  cold-shock DNA-binding domain-containing protein  66.67 
 
 
67 aa  94.4  5e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0979697  normal 
 
 
-
 
NC_011146  Gbem_0208  cold-shock DNA-binding domain protein  65.15 
 
 
66 aa  94  6e-19  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000807689  n/a   
 
 
-
 
NC_009784  VIBHAR_05396  hypothetical protein  61.9 
 
 
69 aa  94  6e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_1580  cold-shock DNA-binding domain protein  68.75 
 
 
67 aa  94  6e-19  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.507056  normal  0.495998 
 
 
-
 
NC_010184  BcerKBAB4_1517  cold-shock DNA-binding domain-containing protein  61.54 
 
 
65 aa  94  7e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4269  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  93.6  7e-19  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1881  cold-shock DNA-binding domain-containing protein  60 
 
 
69 aa  94  7e-19  Psychromonas ingrahamii 37  Bacteria  normal  0.0395263  normal  0.068791 
 
 
-
 
NC_011773  BCAH820_5280  cold shock protein CspC  63.08 
 
 
67 aa  93.6  8e-19  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000584465 
 
 
-
 
NC_009664  Krad_0218  putative cold-shock DNA-binding domain protein  71.88 
 
 
67 aa  93.6  8e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.230692  hitchhiker  0.00399283 
 
 
-
 
NC_005945  BAS5040  cold shock protein CspC  63.08 
 
 
67 aa  93.6  8e-19  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4870  cold shock protein  63.08 
 
 
67 aa  93.6  8e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4885  cold shock protein  63.08 
 
 
67 aa  93.6  8e-19  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3098  cold-shock DNA-binding domain-containing protein  68.85 
 
 
69 aa  93.6  8e-19  Psychromonas ingrahamii 37  Bacteria  normal  0.208356  normal  0.0206903 
 
 
-
 
NC_010184  BcerKBAB4_4985  cold-shock DNA-binding domain-containing protein  63.08 
 
 
67 aa  93.6  8e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2963  cold-shock DNA-binding domain protein  60 
 
 
65 aa  93.6  8e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1449  cold-shock DNA-binding domain-containing protein  63.64 
 
 
66 aa  93.6  8e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  unclonable  0.000000494956  unclonable  0.00000584596 
 
 
-
 
NC_011662  Tmz1t_1251  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  93.6  8e-19  Thauera sp. MZ1T  Bacteria  normal  0.791861  n/a   
 
 
-
 
NC_009675  Anae109_0273  cold-shock DNA-binding domain-containing protein  68.66 
 
 
67 aa  93.2  9e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.355642 
 
 
-
 
NC_009921  Franean1_6575  cold-shock DNA-binding domain-containing protein  68.66 
 
 
67 aa  93.6  9e-19  Frankia sp. EAN1pec  Bacteria  normal  0.513102  normal 
 
 
-
 
NC_007777  Francci3_0260  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  93.6  9e-19  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3095  cold-shock DNA-binding domain-containing protein  67.21 
 
 
69 aa  93.6  9e-19  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0410712 
 
 
-
 
NC_010483  TRQ2_0945  cold-shock DNA-binding domain-containing protein  63.08 
 
 
66 aa  93.6  9e-19  Thermotoga sp. RQ2  Bacteria  unclonable  0.000000276652  n/a   
 
 
-
 
NC_009486  Tpet_0923  cold-shock DNA-binding domain-containing protein  63.08 
 
 
66 aa  93.6  9e-19  Thermotoga petrophila RKU-1  Bacteria  unclonable  0.0000000000200134  n/a   
 
 
-
 
NC_002939  GSU0581  cold-shock domain-contain protein  64.62 
 
 
66 aa  92.8  1e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  65.62 
 
 
67 aa  93.2  1e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_010001  Cphy_0644  cold-shock DNA-binding domain-containing protein  60.61 
 
 
66 aa  92.8  1e-18  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000000253244  n/a   
 
 
-
 
NC_012918  GM21_1077  cold-shock DNA-binding domain protein  66.15 
 
 
66 aa  92.8  1e-18  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.27833e-32 
 
 
-
 
NC_008709  Ping_3704  cold-shock DNA-binding domain-containing protein  61.54 
 
 
69 aa  93.2  1e-18  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_5424  cold shock protein CspC  63.08 
 
 
65 aa  93.2  1e-18  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.491326  n/a   
 
 
-
 
NC_011725  BCB4264_A5310  cold shock protein CspC  63.08 
 
 
65 aa  93.2  1e-18  Bacillus cereus B4264  Bacteria  normal  0.156889  n/a   
 
 
-
 
NC_009616  Tmel_0278  cold-shock DNA-binding domain-containing protein  64.52 
 
 
65 aa  92.8  1e-18  Thermosipho melanesiensis BI429  Bacteria  unclonable  0.0000000141015  n/a   
 
 
-
 
NC_011772  BCG9842_B5647  cold shock protein CspC  63.08 
 
 
65 aa  93.2  1e-18  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000135799 
 
 
-
 
NC_010622  Bphy_0567  cold-shock DNA-binding domain-containing protein  67.19 
 
 
68 aa  93.2  1e-18  Burkholderia phymatum STM815  Bacteria  unclonable  0.0000000000101913  hitchhiker  0.000143899 
 
 
-
 
NC_011146  Gbem_2222  cold-shock DNA-binding domain protein  61.54 
 
 
66 aa  93.2  1e-18  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000977172  n/a   
 
 
-
 
NC_013205  Aaci_2197  cold-shock DNA-binding domain protein  64.62 
 
 
66 aa  93.2  1e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.000000106738  n/a   
 
 
-
 
NC_008345  Sfri_1693  cold-shock DNA-binding domain-containing protein  63.08 
 
 
68 aa  92.8  1e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2005  cold-shock DNA-binding domain protein  61.54 
 
 
66 aa  93.2  1e-18  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1727900000000003e-24 
 
 
-
 
NC_010814  Glov_3186  cold-shock DNA-binding domain protein  63.64 
 
 
67 aa  92.8  1e-18  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000014796  n/a   
 
 
-
 
NC_011146  Gbem_3185  cold-shock DNA-binding domain protein  66.15 
 
 
66 aa  92.8  1e-18  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000997397  n/a   
 
 
-
 
NC_013530  Xcel_1267  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  92.8  1e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.922504  n/a   
 
 
-
 
NC_008709  Ping_1953  cold-shock DNA-binding domain-containing protein  67.21 
 
 
69 aa  93.2  1e-18  Psychromonas ingrahamii 37  Bacteria  normal  0.0846226  normal  0.0196408 
 
 
-
 
NC_007951  Bxe_A0798  cold-shock DNA-binding protein family protein  65.62 
 
 
68 aa  92  2e-18  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000106482  normal 
 
 
-
 
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