More than 300 homologs were found in PanDaTox collection
for query gene Gbem_0208 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_0208  cold-shock DNA-binding domain protein  100 
 
 
66 aa  133  8e-31  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000807689  n/a   
 
 
-
 
NC_012918  GM21_0191  cold-shock DNA-binding domain protein  98.48 
 
 
66 aa  132  1.9999999999999998e-30  Geobacter sp. M21  Bacteria  n/a    unclonable  8.97537e-36 
 
 
-
 
NC_009483  Gura_4020  cold-shock DNA-binding domain-containing protein  89.39 
 
 
66 aa  122  2e-27  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000184454  n/a   
 
 
-
 
NC_007517  Gmet_0340  cold-shock DNA-binding protein family protein  87.88 
 
 
66 aa  120  8e-27  Geobacter metallireducens GS-15  Bacteria  unclonable  3.6796e-20  unclonable  6.2466300000000005e-24 
 
 
 
NC_012918  GM21_2891  cold-shock DNA-binding domain protein  86.36 
 
 
66 aa  119  1.9999999999999998e-26  Geobacter sp. M21  Bacteria  n/a    hitchhiker  6.87323e-28 
 
 
-
 
NC_011146  Gbem_3185  cold-shock DNA-binding domain protein  87.69 
 
 
66 aa  117  3.9999999999999996e-26  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000997397  n/a   
 
 
-
 
NC_012918  GM21_1077  cold-shock DNA-binding domain protein  87.69 
 
 
66 aa  117  3.9999999999999996e-26  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.27833e-32 
 
 
-
 
NC_009483  Gura_0958  cold-shock DNA-binding domain-containing protein  86.36 
 
 
68 aa  117  3.9999999999999996e-26  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000177063  n/a   
 
 
-
 
NC_002939  GSU0207  cold-shock domain-contain protein  83.33 
 
 
66 aa  117  4.9999999999999996e-26  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.0000092661  n/a   
 
 
-
 
NC_009483  Gura_4380  cold-shock DNA-binding domain-containing protein  84.85 
 
 
66 aa  117  4.9999999999999996e-26  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000149248  n/a   
 
 
-
 
NC_011146  Gbem_1391  cold-shock DNA-binding domain protein  84.85 
 
 
66 aa  117  6e-26  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000857842  n/a   
 
 
-
 
NC_008609  Ppro_0557  cold-shock DNA-binding domain-containing protein  83.33 
 
 
67 aa  116  9.999999999999999e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0146749  n/a   
 
 
-
 
NC_008609  Ppro_3308  cold-shock DNA-binding domain-containing protein  81.82 
 
 
66 aa  115  1.9999999999999998e-25  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000000515158  n/a   
 
 
-
 
NC_012918  GM21_2005  cold-shock DNA-binding domain protein  83.08 
 
 
66 aa  115  1.9999999999999998e-25  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1727900000000003e-24 
 
 
-
 
NC_011146  Gbem_2222  cold-shock DNA-binding domain protein  83.08 
 
 
66 aa  115  1.9999999999999998e-25  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000977172  n/a   
 
 
-
 
NC_002939  GSU0191  cold-shock domain-contain protein  80.3 
 
 
66 aa  114  3e-25  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0581  cold-shock domain-contain protein  84.62 
 
 
66 aa  115  3e-25  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3009  cold-shock DNA-binding domain protein  80.3 
 
 
66 aa  115  3e-25  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000000338094  n/a   
 
 
-
 
NC_007517  Gmet_0237  cold-shock DNA-binding protein family protein  81.82 
 
 
66 aa  114  3.9999999999999997e-25  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000000692047  hitchhiker  0.0000000000000296416 
 
 
-
 
NC_012918  GM21_1502  cold-shock DNA-binding domain protein  81.82 
 
 
68 aa  114  6e-25  Geobacter sp. M21  Bacteria  n/a    normal  0.683183 
 
 
-
 
NC_011146  Gbem_2739  cold-shock DNA-binding domain protein  81.82 
 
 
68 aa  113  7.999999999999999e-25  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00000080188  n/a   
 
 
-
 
NC_007517  Gmet_1266  cold-shock DNA-binding protein family protein  83.08 
 
 
66 aa  112  1.0000000000000001e-24  Geobacter metallireducens GS-15  Bacteria  hitchhiker  2.7573e-18  decreased coverage  0.00000000000100442 
 
 
-
 
NC_009483  Gura_3670  cold-shock DNA-binding domain-containing protein  84.62 
 
 
66 aa  112  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000254143  n/a   
 
 
-
 
NC_009483  Gura_4019  cold-shock DNA-binding domain-containing protein  80.3 
 
 
66 aa  112  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.000000000020604  n/a   
 
 
-
 
NC_010814  Glov_3186  cold-shock DNA-binding domain protein  77.27 
 
 
67 aa  110  7.000000000000001e-24  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000014796  n/a   
 
 
-
 
NC_011146  Gbem_0645  cold-shock DNA-binding domain protein  83.08 
 
 
66 aa  109  1.0000000000000001e-23  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000155303  n/a   
 
 
-
 
NC_009483  Gura_3711  cold-shock DNA-binding domain-containing protein  77.27 
 
 
66 aa  109  1.0000000000000001e-23  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000509741  n/a   
 
 
-
 
NC_010814  Glov_2627  cold-shock DNA-binding domain protein  78.79 
 
 
66 aa  109  1.0000000000000001e-23  Geobacter lovleyi SZ  Bacteria  normal  0.0368791  n/a   
 
 
-
 
NC_002939  GSU1905  cold shock domain-contain protein  81.54 
 
 
66 aa  108  3e-23  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00000974395  n/a   
 
 
-
 
NC_012918  GM21_0658  cold-shock DNA-binding domain protein  81.54 
 
 
66 aa  108  3e-23  Geobacter sp. M21  Bacteria  n/a    hitchhiker  8.18008e-25 
 
 
-
 
NC_007498  Pcar_0372  cold shock protein  77.27 
 
 
66 aa  106  8.000000000000001e-23  Pelobacter carbinolicus DSM 2380  Bacteria  unclonable  2.69681e-23  n/a   
 
 
-
 
NC_007498  Pcar_2806  cold shock proteins  78.46 
 
 
85 aa  106  1e-22  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  5.72104e-21  n/a   
 
 
-
 
NC_009675  Anae109_2532  cold-shock DNA-binding domain-containing protein  75.38 
 
 
65 aa  103  8e-22  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.19716  normal  0.287944 
 
 
-
 
NC_009675  Anae109_0273  cold-shock DNA-binding domain-containing protein  76.12 
 
 
67 aa  103  1e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.355642 
 
 
-
 
NC_007498  Pcar_0778  cold shock proteins  75.76 
 
 
66 aa  103  1e-21  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000726747  n/a   
 
 
-
 
NC_011891  A2cp1_2724  cold-shock DNA-binding domain protein  73.85 
 
 
66 aa  102  2e-21  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.720009  n/a   
 
 
-
 
NC_011145  AnaeK_2630  cold-shock DNA-binding domain protein  73.85 
 
 
66 aa  102  2e-21  Anaeromyxobacter sp. K  Bacteria  normal  0.681724  n/a   
 
 
-
 
NC_009513  Lreu_1505  cold-shock DNA-binding protein family protein  72.31 
 
 
66 aa  102  2e-21  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.248091  n/a   
 
 
-
 
NC_007760  Adeh_1235  cold-shock DNA-binding protein family protein  73.85 
 
 
66 aa  102  2e-21  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  74.63 
 
 
67 aa  100  6e-21  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  74.63 
 
 
67 aa  100  6e-21  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  74.63 
 
 
67 aa  100  6e-21  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_008554  Sfum_1449  cold-shock DNA-binding domain-containing protein  71.21 
 
 
66 aa  98.6  2e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  unclonable  0.000000494956  unclonable  0.00000584596 
 
 
-
 
NC_011901  Tgr7_0507  cold-shock DNA-binding domain protein  72.31 
 
 
67 aa  98.2  3e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.804223  n/a   
 
 
-
 
NC_009943  Dole_3065  cold-shock DNA-binding domain-containing protein  72.73 
 
 
66 aa  97.1  7e-20  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000279167  n/a   
 
 
-
 
NC_011772  BCG9842_B1369  hypothetical protein  72.31 
 
 
66 aa  96.7  9e-20  Bacillus cereus G9842  Bacteria  normal  normal  0.309276 
 
 
-
 
NC_008531  LEUM_1878  cold-shock DNA-binding protein family protein  67.69 
 
 
66 aa  96.7  1e-19  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1374  cold-shock DNA-binding domain protein  73.44 
 
 
67 aa  96.7  1e-19  Thauera sp. MZ1T  Bacteria  normal  0.287556  n/a   
 
 
-
 
NC_013205  Aaci_2197  cold-shock DNA-binding domain protein  67.69 
 
 
66 aa  95.9  2e-19  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.000000106738  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3242  cold-shock DNA-binding domain-containing protein  72.31 
 
 
66 aa  94.7  4e-19  Bacillus weihenstephanensis KBAB4  Bacteria  unclonable  0.0000000134861  n/a   
 
 
-
 
NC_007298  Daro_3392  cold-shock DNA-binding protein family protein  73.44 
 
 
68 aa  94.4  5e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3598  cold-shock DNA-binding domain-containing protein  72.31 
 
 
66 aa  94  6e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.851035  n/a   
 
 
-
 
NC_011891  A2cp1_3366  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  94  6e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0590  cold-shock protein  71.21 
 
 
67 aa  94  6e-19  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  hitchhiker  0.000832642  n/a   
 
 
-
 
NC_007498  Pcar_0201  cold shock protein  65.15 
 
 
66 aa  94  6e-19  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000435671  n/a   
 
 
-
 
NC_011206  Lferr_0742  cold-shock DNA-binding domain protein  71.21 
 
 
67 aa  94  6e-19  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  unclonable  0.0000000000219995  unclonable  0.0000000000274746 
 
 
-
 
NC_008609  Ppro_0752  cold-shock DNA-binding domain-containing protein  69.7 
 
 
67 aa  94  6e-19  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00000576972  n/a   
 
 
-
 
NC_008009  Acid345_4356  cold-shock DNA-binding protein family protein  65.15 
 
 
66 aa  94  7e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.184389 
 
 
-
 
NC_009675  Anae109_4117  cold-shock DNA-binding domain-containing protein  71.88 
 
 
67 aa  94  7e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.327381  normal  0.21845 
 
 
-
 
NC_011891  A2cp1_1049  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  93.6  8e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3292  cold-shock DNA-binding domain protein  71.88 
 
 
67 aa  93.6  8e-19  Anaeromyxobacter sp. K  Bacteria  hitchhiker  0.0070619  n/a   
 
 
-
 
NC_008527  LACR_0174  cold-shock DNA-binding protein family protein  66.15 
 
 
65 aa  93.6  8e-19  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.0000215085  n/a   
 
 
-
 
NC_007760  Adeh_0988  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  93.6  8e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1045  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  93.6  8e-19  Anaeromyxobacter sp. K  Bacteria  normal  0.396466  n/a   
 
 
-
 
NC_007204  Psyc_0942  cold-shock DNA-binding protein family protein  65.62 
 
 
71 aa  93.6  9e-19  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1732  cold-shock DNA-binding domain-containing protein  71.88 
 
 
66 aa  93.2  1e-18  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.0000000000101176  n/a   
 
 
-
 
NC_003909  BCE_3553  cold shock protein CspB  69.23 
 
 
66 aa  92.8  1e-18  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000000960966  n/a   
 
 
-
 
NC_005945  BAS3333  cold shock protein CspB  69.23 
 
 
66 aa  92.8  1e-18  Bacillus anthracis str. Sterne  Bacteria  unclonable  0.0000000000000736097  n/a   
 
 
-
 
NC_005957  BT9727_3297  cold shock protein  69.23 
 
 
66 aa  92.8  1e-18  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  unclonable  1.0310600000000001e-23  n/a   
 
 
-
 
NC_006274  BCZK3248  cold shock protein  69.23 
 
 
66 aa  92.8  1e-18  Bacillus cereus E33L  Bacteria  unclonable  0.0000000000000222014  n/a   
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  67.16 
 
 
67 aa  92.8  1e-18  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_009784  VIBHAR_05396  hypothetical protein  66.15 
 
 
69 aa  93.2  1e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_3214  cold-shock DNA-binding domain-containing protein  63.64 
 
 
67 aa  92.8  1e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0979697  normal 
 
 
-
 
NC_011772  BCG9842_B1670  cold shock protein CspB  69.23 
 
 
66 aa  92.8  1e-18  Bacillus cereus G9842  Bacteria  unclonable  0.000000000143673  decreased coverage  2.4479999999999998e-23 
 
 
-
 
NC_007530  GBAA_3594  cold shock protein CspB  69.23 
 
 
66 aa  92.8  1e-18  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000000000000632893  n/a   
 
 
-
 
NC_011658  BCAH187_A3557  cold shock protein CspB  69.23 
 
 
66 aa  92.8  1e-18  Bacillus cereus AH187  Bacteria  unclonable  0.000000000616269  n/a   
 
 
-
 
NC_008009  Acid345_4183  cold-shock DNA-binding protein family protein  65.08 
 
 
67 aa  93.2  1e-18  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0862888  normal  0.391924 
 
 
-
 
NC_011725  BCB4264_A3647  cold shock protein CspB  69.23 
 
 
66 aa  92.8  1e-18  Bacillus cereus B4264  Bacteria  unclonable  0.00000702498  n/a   
 
 
-
 
NC_011773  BCAH820_3548  cold shock protein CspB  69.23 
 
 
66 aa  92.8  1e-18  Bacillus cereus AH820  Bacteria  n/a    decreased coverage  4.8624399999999996e-45 
 
 
-
 
NC_009674  Bcer98_2221  cold-shock DNA-binding domain-containing protein  69.23 
 
 
66 aa  92.4  2e-18  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000348612  n/a   
 
 
-
 
NC_009524  PsycPRwf_0769  cold-shock DNA-binding domain-containing protein  65.62 
 
 
71 aa  92.4  2e-18  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.0000000056179  normal 
 
 
-
 
NC_011662  Tmz1t_1251  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  92.4  2e-18  Thauera sp. MZ1T  Bacteria  normal  0.791861  n/a   
 
 
-
 
NC_012803  Mlut_19390  cold-shock DNA-binding protein family  68.66 
 
 
67 aa  92  2e-18  Micrococcus luteus NCTC 2665  Bacteria  normal  0.704539  n/a   
 
 
-
 
NC_007644  Moth_0226  cold-shock DNA-binding protein family protein  65.62 
 
 
65 aa  92  2e-18  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000000000017804  normal 
 
 
-
 
NC_007760  Adeh_3176  cold-shock DNA-binding protein family protein  70.31 
 
 
67 aa  92  2e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0248  cold shock protein CspD  69.23 
 
 
66 aa  92  2e-18  Bacillus cereus G9842  Bacteria  hitchhiker  0.00000599312  normal 
 
 
-
 
NC_011901  Tgr7_0492  putative cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  92  2e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4519  cold-shock DNA-binding protein family protein  65.62 
 
 
66 aa  92.4  2e-18  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1257  putative cold shock-like protein  70.31 
 
 
70 aa  91.7  3e-18  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.143325 
 
 
-
 
NC_009783  VIBHAR_00522  cold shock protein  68.25 
 
 
69 aa  91.7  3e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_1862  cold-shock DNA-binding domain-containing protein  71.88 
 
 
69 aa  92  3e-18  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.861564  n/a   
 
 
-
 
NC_007969  Pcryo_1475  cold-shock DNA-binding domain-containing protein  64.06 
 
 
71 aa  91.7  3e-18  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_4972  cold shock protein CspD  67.69 
 
 
66 aa  91.3  4e-18  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_5019  cold shock protein CspD  67.69 
 
 
66 aa  91.3  4e-18  Bacillus cereus ATCC 10987  Bacteria  normal  0.0351296  n/a   
 
 
-
 
NC_011658  BCAH187_A5001  cold shock protein CspD  67.69 
 
 
66 aa  91.3  4e-18  Bacillus cereus AH187  Bacteria  normal  0.219986  n/a   
 
 
-
 
NC_005957  BT9727_4592  cold shock protein  67.69 
 
 
66 aa  91.3  4e-18  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00000000000232551  n/a   
 
 
-
 
NC_006274  BCZK4614  cold shock protein  67.69 
 
 
66 aa  91.3  4e-18  Bacillus cereus E33L  Bacteria  unclonable  0.0000000000000169422  n/a   
 
 
-
 
NC_007498  Pcar_2370  cold shock proteins  65.15 
 
 
66 aa  91.7  4e-18  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  6.71289e-19  n/a   
 
 
-
 
NC_011901  Tgr7_0172  cold-shock DNA-binding domain protein  71.88 
 
 
67 aa  91.3  4e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.0000163048  n/a   
 
 
-
 
NC_011725  BCB4264_A4990  cold shock protein CspD  67.69 
 
 
66 aa  91.3  4e-18  Bacillus cereus B4264  Bacteria  hitchhiker  0.00510931  n/a   
 
 
-
 
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