More than 300 homologs were found in PanDaTox collection
for query gene Daci_2974 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_2974  binding-protein-dependent transport systems inner membrane component  100 
 
 
342 aa  679    Delftia acidovorans SPH-1  Bacteria  normal  0.552398  normal 
 
 
-
 
NC_007908  Rfer_2129  binding-protein-dependent transport systems inner membrane component  87.21 
 
 
344 aa  602  1.0000000000000001e-171  Rhodoferax ferrireducens T118  Bacteria  normal  0.291354  n/a   
 
 
-
 
NC_007948  Bpro_2421  binding-protein-dependent transport systems inner membrane component  83.14 
 
 
344 aa  580  1.0000000000000001e-165  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00114687  normal 
 
 
-
 
NC_008781  Pnap_2016  binding-protein-dependent transport systems inner membrane component  82.56 
 
 
344 aa  578  1e-164  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.887108 
 
 
-
 
NC_012791  Vapar_2742  binding-protein-dependent transport systems inner membrane component  80.23 
 
 
344 aa  568  1e-161  Variovorax paradoxus S110  Bacteria  normal  0.564581  n/a   
 
 
-
 
NC_011992  Dtpsy_1917  binding-protein-dependent transport systems inner membrane component  87.54 
 
 
345 aa  568  1e-161  Acidovorax ebreus TPSY  Bacteria  normal  0.14249  n/a   
 
 
-
 
NC_008752  Aave_3253  binding-protein-dependent transport systems inner membrane component  87.32 
 
 
347 aa  567  1e-160  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1811  binding-protein-dependent transport systems inner membrane component  87.25 
 
 
345 aa  563  1.0000000000000001e-159  Acidovorax sp. JS42  Bacteria  normal  0.0525112  normal 
 
 
-
 
NC_008786  Veis_3813  binding-protein-dependent transport systems inner membrane component  86.67 
 
 
345 aa  552  1e-156  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0689271 
 
 
-
 
NC_009379  Pnuc_1236  binding-protein-dependent transport systems inner membrane component  73.22 
 
 
354 aa  509  1e-143  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1274  binding-protein-dependent transport systems inner membrane component  71.14 
 
 
345 aa  490  1e-137  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0000273194 
 
 
-
 
NC_003295  RSc1174  transmembrane ABC transporter protein  70.52 
 
 
351 aa  485  1e-136  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.0000600892  normal  0.310327 
 
 
-
 
NC_007347  Reut_A2128  binding-protein dependent transport system inner membrane protein  72.54 
 
 
350 aa  487  1e-136  Ralstonia eutropha JMP134  Bacteria  normal  0.385957  n/a   
 
 
-
 
NC_010531  Pnec_1103  binding-protein-dependent transport systems inner membrane component  72.36 
 
 
358 aa  482  1e-135  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2500  binding-protein-dependent transport systems inner membrane component  72.46 
 
 
345 aa  481  1e-134  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0191785  normal  0.0206964 
 
 
-
 
NC_007973  Rmet_2145  binding-protein-dependent transport systems inner membrane component  71.3 
 
 
349 aa  481  1e-134  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_0396  binding-protein-dependent transport systems inner membrane component  67.71 
 
 
354 aa  475  1e-133  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1382  binding-protein-dependent transport systems inner membrane component  71.51 
 
 
346 aa  476  1e-133  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.00200208  normal 
 
 
-
 
NC_007951  Bxe_A1637  ABC peptide transporter, inner membrane subunit  71.01 
 
 
345 aa  476  1e-133  Burkholderia xenovorans LB400  Bacteria  normal  0.648202  normal  0.318212 
 
 
-
 
NC_012856  Rpic12D_1109  binding-protein-dependent transport systems inner membrane component  71.59 
 
 
350 aa  473  1e-132  Ralstonia pickettii 12D  Bacteria  normal  normal  0.651204 
 
 
-
 
NC_010084  Bmul_1215  binding-protein-dependent transport systems inner membrane component  71.3 
 
 
347 aa  472  1e-132  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.54297 
 
 
-
 
NC_010551  BamMC406_1963  binding-protein-dependent transport systems inner membrane component  71.59 
 
 
347 aa  472  1e-132  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1015  binding-protein-dependent transport systems inner membrane component  71.3 
 
 
350 aa  472  1e-132  Ralstonia pickettii 12J  Bacteria  normal  0.939942  decreased coverage  0.0094028 
 
 
-
 
NC_008390  Bamb_2093  binding-protein-dependent transport systems inner membrane component  71.01 
 
 
347 aa  471  1e-132  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A5370  ABC transporter, inner membrane subunit  70.72 
 
 
347 aa  468  1.0000000000000001e-131  Burkholderia sp. 383  Bacteria  normal  0.190291  normal  0.861053 
 
 
-
 
NC_007651  BTH_I1979  ABC transporter, permease protein  71.8 
 
 
370 aa  470  1.0000000000000001e-131  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00000000494739  n/a   
 
 
-
 
NC_010508  Bcenmc03_2080  binding-protein-dependent transport systems inner membrane component  70.72 
 
 
347 aa  468  1.0000000000000001e-131  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.338378  normal  0.937484 
 
 
-
 
NC_008785  BMASAVP1_A2108  ABC transporter, permease protein  71.22 
 
 
346 aa  466  9.999999999999999e-131  Burkholderia mallei SAVP1  Bacteria  normal  0.0366053  n/a   
 
 
-
 
NC_007434  BURPS1710b_2634  putative ABC transport system, membrane protein  71.22 
 
 
455 aa  465  9.999999999999999e-131  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0725782  n/a   
 
 
-
 
NC_009080  BMA10247_1381  ABC transporter, permease protein  71.22 
 
 
346 aa  466  9.999999999999999e-131  Burkholderia mallei NCTC 10247  Bacteria  normal  0.238328  n/a   
 
 
-
 
NC_008836  BMA10229_A3205  ABC transporter, permease protein  71.22 
 
 
346 aa  466  9.999999999999999e-131  Burkholderia mallei NCTC 10229  Bacteria  decreased coverage  0.000674085  n/a   
 
 
-
 
NC_009074  BURPS668_2492  ABC transporter, permease protein  71.22 
 
 
346 aa  466  9.999999999999999e-131  Burkholderia pseudomallei 668  Bacteria  normal  0.0860653  n/a   
 
 
-
 
NC_008062  Bcen_6016  binding-protein-dependent transport systems inner membrane component  70.43 
 
 
347 aa  467  9.999999999999999e-131  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.658809  n/a   
 
 
-
 
NC_008542  Bcen2424_2061  binding-protein-dependent transport systems inner membrane component  70.43 
 
 
347 aa  467  9.999999999999999e-131  Burkholderia cenocepacia HI2424  Bacteria  normal  0.251429  n/a   
 
 
-
 
NC_009076  BURPS1106A_2546  ABC transporter, permease protein  70.93 
 
 
346 aa  464  1e-129  Burkholderia pseudomallei 1106a  Bacteria  decreased coverage  0.00426967  n/a   
 
 
-
 
NC_008576  Mmc1_2154  binding-protein-dependent transport systems inner membrane component  64.27 
 
 
350 aa  451  1.0000000000000001e-126  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.431982 
 
 
-
 
NC_007947  Mfla_1542  binding-protein-dependent transport systems inner membrane component  64.37 
 
 
352 aa  450  1e-125  Methylobacillus flagellatus KT  Bacteria  normal  0.74003  normal  0.452756 
 
 
-
 
NC_007951  Bxe_A2992  ABC transporter, inner membrane subunit  66.76 
 
 
350 aa  444  1.0000000000000001e-124  Burkholderia xenovorans LB400  Bacteria  normal  0.0712485  normal 
 
 
-
 
NC_010508  Bcenmc03_1724  binding-protein-dependent transport systems inner membrane component  64.74 
 
 
350 aa  444  1e-123  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.106153  normal  0.226487 
 
 
-
 
NC_010681  Bphyt_1449  binding-protein-dependent transport systems inner membrane component  66.18 
 
 
350 aa  442  1e-123  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_6369  binding-protein-dependent transport systems inner membrane component  64.45 
 
 
350 aa  443  1e-123  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.673623  n/a   
 
 
-
 
NC_008542  Bcen2424_1709  binding-protein-dependent transport systems inner membrane component  64.45 
 
 
350 aa  443  1e-123  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A5000  ABC transporter, inner membrane subunit  65.03 
 
 
350 aa  439  9.999999999999999e-123  Burkholderia sp. 383  Bacteria  normal  0.47497  normal  0.396985 
 
 
-
 
NC_007492  Pfl01_2180  binding-protein dependent transport system inner membrane protein  58.24 
 
 
357 aa  421  1e-116  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.776832 
 
 
-
 
NC_012560  Avin_29660  oligopeptide ABC transporter, inner membrane permease component  58.82 
 
 
361 aa  421  1e-116  Azotobacter vinelandii DJ  Bacteria  normal  0.124853  n/a   
 
 
-
 
NC_011894  Mnod_0516  binding-protein-dependent transport systems inner membrane component  57.3 
 
 
367 aa  420  1e-116  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.968567  n/a   
 
 
-
 
NC_009667  Oant_0013  binding-protein-dependent transport systems inner membrane component  57.42 
 
 
365 aa  415  9.999999999999999e-116  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0654461  n/a   
 
 
-
 
NC_009439  Pmen_2059  binding-protein-dependent transport systems inner membrane component  57.79 
 
 
357 aa  414  9.999999999999999e-116  Pseudomonas mendocina ymp  Bacteria  normal  0.270311  normal  0.8272 
 
 
-
 
NC_004310  BR0008  ABC transporter, permease protein  57.06 
 
 
365 aa  413  1e-114  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0008  ABC transporter, permease protein  57.06 
 
 
365 aa  413  1e-114  Brucella ovis ATCC 25840  Bacteria  hitchhiker  0.00620347  n/a   
 
 
-
 
NC_007406  Nwi_0290  binding-protein dependent transport system inner membrane protein  54.79 
 
 
369 aa  413  1e-114  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3487  ABC transporter permease  56.58 
 
 
360 aa  409  1e-113  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1772  binding-protein-dependent transport systems inner membrane component  53.42 
 
 
369 aa  407  1e-113  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.02836 
 
 
-
 
NC_010511  M446_1614  binding-protein-dependent transport systems inner membrane component  56.08 
 
 
366 aa  408  1e-113  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.26731 
 
 
-
 
NC_007958  RPD_3533  binding-protein-dependent transport systems inner membrane component  54.25 
 
 
369 aa  409  1e-113  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0507851  normal 
 
 
-
 
NC_011666  Msil_3915  binding-protein-dependent transport systems inner membrane component  55.77 
 
 
363 aa  410  1e-113  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008463  PA14_41140  ABC transporter permease  56.58 
 
 
360 aa  409  1e-113  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4148  binding-protein-dependent transport systems inner membrane component  56.25 
 
 
357 aa  405  1.0000000000000001e-112  Pseudomonas putida KT2440  Bacteria  normal  0.0120356  normal 
 
 
-
 
NC_004578  PSPTO_3718  ABC transporter, permease protein  56.09 
 
 
357 aa  404  1.0000000000000001e-112  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1757  binding-protein dependent transport system inner membrane protein  56.09 
 
 
357 aa  405  1.0000000000000001e-112  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.443887  normal  0.0467925 
 
 
-
 
NC_011757  Mchl_0389  binding-protein-dependent transport systems inner membrane component  54.64 
 
 
365 aa  405  1.0000000000000001e-112  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0428619  normal  0.991349 
 
 
-
 
NC_010501  PputW619_3473  binding-protein-dependent transport systems inner membrane component  56.25 
 
 
357 aa  405  1.0000000000000001e-112  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0344  binding-protein-dependent transport systems inner membrane component  54.64 
 
 
365 aa  405  1.0000000000000001e-112  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3641  binding-protein-dependent transport systems inner membrane component  54.67 
 
 
368 aa  406  1.0000000000000001e-112  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0421438 
 
 
-
 
NC_007925  RPC_3727  binding-protein-dependent transport systems inner membrane component  54.25 
 
 
369 aa  407  1.0000000000000001e-112  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1947  binding-protein-dependent transport systems inner membrane component  58.86 
 
 
354 aa  407  1.0000000000000001e-112  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.162998  n/a   
 
 
-
 
NC_007964  Nham_0380  binding-protein-dependent transport systems inner membrane component  53.7 
 
 
369 aa  405  1.0000000000000001e-112  Nitrobacter hamburgensis X14  Bacteria  normal  0.530667  n/a   
 
 
-
 
NC_009512  Pput_1717  binding-protein-dependent transport systems inner membrane component  56.53 
 
 
357 aa  406  1.0000000000000001e-112  Pseudomonas putida F1  Bacteria  normal  0.552339  normal 
 
 
-
 
NC_010725  Mpop_0423  binding-protein-dependent transport systems inner membrane component  54.92 
 
 
365 aa  407  1.0000000000000001e-112  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3359  binding-protein-dependent transport systems inner membrane component  54.87 
 
 
363 aa  404  1e-111  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.710892  normal  0.120793 
 
 
-
 
NC_010322  PputGB1_3720  binding-protein-dependent transport systems inner membrane component  55.97 
 
 
357 aa  402  1e-111  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00285143  normal 
 
 
-
 
NC_011004  Rpal_4212  binding-protein-dependent transport systems inner membrane component  53.7 
 
 
369 aa  404  1e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.477185  n/a   
 
 
-
 
NC_009720  Xaut_2634  binding-protein-dependent transport systems inner membrane component  55.04 
 
 
371 aa  402  1e-111  Xanthobacter autotrophicus Py2  Bacteria  normal  0.177277  normal  0.471787 
 
 
-
 
NC_009719  Plav_0247  binding-protein-dependent transport systems inner membrane component  55.34 
 
 
369 aa  401  1e-111  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7053  oligopeptide ABC transporter membrane protein  54.37 
 
 
370 aa  400  9.999999999999999e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.295774  normal 
 
 
-
 
NC_012917  PC1_1644  binding-protein-dependent transport systems inner membrane component  53.59 
 
 
365 aa  400  9.999999999999999e-111  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.639895  n/a   
 
 
-
 
NC_013421  Pecwa_1915  binding-protein-dependent transport systems inner membrane component  53.87 
 
 
364 aa  400  9.999999999999999e-111  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2271  binding-protein-dependent transport systems inner membrane component  54.32 
 
 
363 aa  400  9.999999999999999e-111  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0290  ABC transporter substrate binding inner membrane protein  53.93 
 
 
358 aa  398  9.999999999999999e-111  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0179  binding-protein-dependent transport systems inner membrane component  55.12 
 
 
364 aa  395  1e-109  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0100071  normal 
 
 
-
 
NC_013173  Dbac_1349  binding-protein-dependent transport systems inner membrane component  54.4 
 
 
368 aa  397  1e-109  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.128685  n/a   
 
 
-
 
NC_009636  Smed_3365  binding-protein-dependent transport systems inner membrane component  53.93 
 
 
360 aa  396  1e-109  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_4082  binding-protein-dependent transport systems inner membrane component  54.7 
 
 
366 aa  395  1e-109  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_4133  binding-protein-dependent transport systems inner membrane component  52.79 
 
 
362 aa  394  1e-108  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4447  binding-protein-dependent transport systems inner membrane component  53.07 
 
 
362 aa  394  1e-108  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.654672  normal  0.825965 
 
 
-
 
NC_002947  PP_3077  binding-protein-dependent transport systems inner membrane component  55.56 
 
 
352 aa  388  1e-107  Pseudomonas putida KT2440  Bacteria  normal  normal  0.837168 
 
 
-
 
NC_009512  Pput_2647  binding-protein-dependent transport systems inner membrane component  55.59 
 
 
352 aa  388  1e-107  Pseudomonas putida F1  Bacteria  normal  0.783246  normal 
 
 
-
 
NC_010465  YPK_2787  binding-protein-dependent transport systems inner membrane component  52.89 
 
 
366 aa  389  1e-107  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.399987  n/a   
 
 
-
 
NC_009708  YpsIP31758_2712  ABC transporter, permease protein  52.89 
 
 
366 aa  389  1e-107  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1496  ABC transporter permease  52.89 
 
 
366 aa  389  1e-107  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3074  binding-protein dependent transport system inner membrane protein  54.02 
 
 
353 aa  387  1e-106  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2433  binding-protein-dependent transport systems inner membrane component  52.57 
 
 
365 aa  385  1e-106  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3247  binding-protein-dependent transport systems inner membrane component  52.2 
 
 
364 aa  385  1e-106  Serratia proteamaculans 568  Bacteria  normal  0.559652  normal  0.0140397 
 
 
-
 
NC_010501  PputW619_2714  binding-protein-dependent transport systems inner membrane component  55.3 
 
 
352 aa  387  1e-106  Pseudomonas putida W619  Bacteria  normal  normal  0.124868 
 
 
-
 
NC_008740  Maqu_1539  binding-protein-dependent transport systems inner membrane component  55.34 
 
 
361 aa  385  1e-106  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0245  ABC transporter membrane spanning protein (peptide)  54.04 
 
 
363 aa  387  1e-106  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1469  binding-protein-dependent transport systems inner membrane component  53.04 
 
 
364 aa  382  1e-105  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.00000191994  normal  0.0382129 
 
 
-
 
NC_009801  EcE24377A_2476  ABC transporter, permease protein  53.04 
 
 
364 aa  381  1e-105  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3316  ABC transporter, permease protein  53.04 
 
 
364 aa  382  1e-105  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.655724  normal  0.226821 
 
 
-
 
NC_009800  EcHS_A2316  ABC transporter, permease protein  53.04 
 
 
364 aa  382  1e-105  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
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