Gene PC1_1644 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1644 
Symbol 
ID8132586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1892616 
End bp1893713 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content51% 
IMG OID644864932 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003017221 
Protein GI253688031 
COG category[R] General function prediction only 
COG ID[COG4174] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.639895 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAACGT ATCTGTTACG CCGCCTCTTG CTGGTCATTC CAACCCTGTG GGCGATTATC 
ACGATTAATT TTTTCATTGT ACAAATTGCC CCTGGCGGCC CGGTGGATCA GGCTATTGCA 
GCAATTGAAA TGGGACACGG CAGCGGCTAT ACCGCCAATA GCGGAATGGA TGCCGGAATG 
GCACGCACTG GCACCAGCGG TGCCCCCAAT ATCGAGAATG CTTATAGAGG CTCACGCGGG 
CTCGACCCGG AGGTCATCGA GGAAATAACC AAACGCTATG GCTTCGATAA ACCGATCCAT 
GAGCGCTATT TTAAACTGCT GTGGGATTAT GTCCGTTTTG ACTTCGGCGA CAGCCTGTTT 
CGCGGCTCTT CGGTGATGCA ACTGATTAAA GAAAGCATGC CGGTGTCAAT CACATTGGGA 
CTATGGAGTA CGCTGATCGT CTACCTGATT TCTATTCCTC TTGGCATCAA GAAAGCGGTG 
AAGAACGGTA CGCCTTTCGA TACCTGGAGC AGTACGTTAA TCATTATCGG TTATGCGATC 
CCGGCGTTTT TGTTTGCGAT CATTTTGATT GTGCTGTTCG CCGGCGGCAG TTATCTAGAT 
TGGTTCCCGC TTCGAGGGCT GGTTTCCAGC AATTTTGATA CTCTGCCGTG GTACAGCAAG 
GTTACCGACT ATTTGTGGCA CATCGCATTA CCCGTTATCG CGTCCGTGAT TGGCGGTTTT 
GCTACCCTCA CCATGCTCAC CAAGAACTCG TTTATGGATG AGATTCGTAA GCAATACGTG 
GTTACCGCAC GCGCTAAAGG GCTGGATGAA AAAAGTATTC TCTACCGCCA TGTGTTCCGT 
AATGCCATGC TGCTGGTGAT CGCCGGTTTC CCCGCCACCT TTATCAGTAT GTTTTTCACC 
GGCTCGCTGC TGATTGAGGT GATGTTCTCG CTCAACGGGT TGGGCCTGCT GGGCTATGAC 
GCGACGCTGC AACGTGACTA TCCCGTCATG TTCGGTACGC TGTATATCTT CACGCTGATC 
GGCCTACTGC TTAATATCGT CAGTGACATG ACTTATACGC TGGTGGATCC GCGTATCGAT 
TTTGAGGGAC GCCAATGA
 
Protein sequence
MGTYLLRRLL LVIPTLWAII TINFFIVQIA PGGPVDQAIA AIEMGHGSGY TANSGMDAGM 
ARTGTSGAPN IENAYRGSRG LDPEVIEEIT KRYGFDKPIH ERYFKLLWDY VRFDFGDSLF 
RGSSVMQLIK ESMPVSITLG LWSTLIVYLI SIPLGIKKAV KNGTPFDTWS STLIIIGYAI 
PAFLFAIILI VLFAGGSYLD WFPLRGLVSS NFDTLPWYSK VTDYLWHIAL PVIASVIGGF 
ATLTMLTKNS FMDEIRKQYV VTARAKGLDE KSILYRHVFR NAMLLVIAGF PATFISMFFT 
GSLLIEVMFS LNGLGLLGYD ATLQRDYPVM FGTLYIFTLI GLLLNIVSDM TYTLVDPRID 
FEGRQ