Gene Plav_0247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0247 
Symbol 
ID5456157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp266869 
End bp267978 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content55% 
IMG OID640875810 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001411527 
Protein GI154250703 
COG category[R] General function prediction only 
COG ID[COG4174] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCCT ATATCATCCG CCGCCTGCTG CTCATGATCC CGACTATTTT CGGCATCATG 
CTTGTCAGTT TTATCCTCGT GCAGTTTGCA CCCGGTGGTC CCATTGAGCG GATCGTTGCA
CAGCTTCAGG GTACCGATGT CTCTGCGACC GCACGTATCG GCGGCTCCGG CGGCGGCGAC
TTCGGCGCGC AAGGGCAGAT GTCCGGAGCA GACAGCTCCA TCAACAGCAA ATATCGCGGT
GCCCAAGGGC TGGATCCCGA GTTTATCAAA TCGCTTGAGG TGCAGTTTGG GTTCGACAAA
CCGGCCCACG AGCGGTTCGC CAAAATGATC TGGGATTATG CCCGCTTCGA CTTCGGGCAA
AGCTATTTCC GCGACGTGAG CGTTCTCAGC CTCGTGCTGG AGAAGATGCC GGTGTCGATT
ACTCTCGGGC TTTGGACAAC GCTACTCACT TATCTCATTT CGATCCCACT TGGGATCCGC
AAGGCAATTC GCGACGGGAC CCGGTTCGAT ACATGGACGA GCGGCATCAT CATCGTCGGC
TATGCGGTGC CCGGCTTTTT GTTCGCGGTG TTTCTGATCG TTCTTTTCTC CGGGGGCTCC
TACTGGTCGA TCTTTCCCTT GCGCGGTCTC ACATCCGACA ACTGGGAAAG CCTGAGCCTC
GCCGGAAAGG CGCTCGATTA TCTTTGGCAT GTCGTTCTGC CGGTGACCGC GCTGGTTATC
GGCTCGTTCG CGACAACAAC ACTGCTGACA AAGAATTCCT TTCTGGATGA AATCAAGAAG
CAATATGTGA TGACCGCGCG TGCCAAAGGG CTGTCCGAAC ATCAGGTTTT GTATGGGCAT
GTATTCCGGA ATGCCATGCT CATCATCATT GCCGGTTTTC CCGGCGCCTT TGTCGGCGCG
TTCTTCACGG GGTCACTCCT CATAGAACAA ATTTTTTCGT TGGATGGGCT TGGTCTTCTG
TCATTTGAAT CCATCGTCAA TCGCGATTAC CCGGTGGTGT TCGCCACGCT TTATATATTC
GGCCTACTCG GCCTCGCGAT GACGCTCATC AGCGATCTCA CATATACTTG GGTCGACCCG
CGCATCGACT TTGAAACAAG GGAGGCCTAA
 
Protein sequence
MSAYIIRRLL LMIPTIFGIM LVSFILVQFA PGGPIERIVA QLQGTDVSAT ARIGGSGGGD 
FGAQGQMSGA DSSINSKYRG AQGLDPEFIK SLEVQFGFDK PAHERFAKMI WDYARFDFGQ
SYFRDVSVLS LVLEKMPVSI TLGLWTTLLT YLISIPLGIR KAIRDGTRFD TWTSGIIIVG
YAVPGFLFAV FLIVLFSGGS YWSIFPLRGL TSDNWESLSL AGKALDYLWH VVLPVTALVI
GSFATTTLLT KNSFLDEIKK QYVMTARAKG LSEHQVLYGH VFRNAMLIII AGFPGAFVGA
FFTGSLLIEQ IFSLDGLGLL SFESIVNRDY PVVFATLYIF GLLGLAMTLI SDLTYTWVDP
RIDFETREA