| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1274 |
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| Symbol | |
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| ID | 6162526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1359356 |
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| End bp | 1360393 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641664028 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001790308 |
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| Protein GI | 171057959 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4174] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000273194 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCGCCT ACATCCTCAA GCGCATCCTG CTGATGATCC CCACGCTGCT GGGTGCGCTG
ACGATCACCT TCGTGGTGAT CCAGTTCGTG CCCGGCGGGC CGGTCGAGCA GCTGATGGCC
GAAGCGCGGC AGACGCAAAA GGGCGGCGAA GGCGGCGGCT ACAAGGCCAG CCGCGATGTC
GACAAGCAGC AGATCGAGGA GCTGAAGAAG CTCTACGGCT TCGACCAGCC CGCGCATGTG
CGCTATGTCG AGATGCTCGG CCGCTTCGCG CGTTTCGACC TCGGCCGCAG CTTCATGTTC
AACAAGGACG TCGGCACGCT GATCCTCGAG AAGCTGCCGG TGTCGATCAG CCTGGGGCTG
TGGAGCTTCC TGATCTCGTA CCTGGTGTCG ATCCCGCTGG GCGTGGCCAA GGCGGTGCAT
GACGGCTCAC GGTTCGACGT CGCCACCACG CTGCTGGTGC TGGTCGGCTA CGCGATCCCG
GGCTTCGTGC TGGGCGTGCT GCTGATCGTG CTGACCGCCG GCGGCACCTA CCTCGACTGG
TTTCCGCTGC GCGGGCTGAC GTCCGACAAC TGGGCCGATC TCACCTGGCC GGCGCGCATC
GCCGACTACT TCTGGCACCT GGCGCTGCCG CTGACCTGCA TGGTGATCGG CAGCTTCGCG
GTGATGACGA TGCTGACCAA GAACACCTTC GTGGAAGAGA TGCGCAAGCA GTACGTCAAG
GTGGCACGTG CCAAGGGCCT GTCGGCCAAC CGCGTGCTCT ACAAGCACAT CTTCCGCAAC
GCGCTGATCC CGCTGATCAC GGGCTTTCCG GCGGCGTTCG TCGGTGCCTT CTTCGCCGGC
TCGGTGCTGA TCGAGAACCT GTTTTCGCTC GACGGCCTGG GCCAGCTCGG CTACGAGGCG
GTGATCCGGC GCGACTACCC CGTCGTGCTG GGCTCGCTCT ACCTCTTCAC GCTGATCGGG
CTGGTGGTCA AGCTGGTGTC GGACCTGCTG TACGTGGTGG TCGACCCGCG CGTGCAGTTC
GCGAAGGCGG CCAAATGA
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| Protein sequence | MLAYILKRIL LMIPTLLGAL TITFVVIQFV PGGPVEQLMA EARQTQKGGE GGGYKASRDV
DKQQIEELKK LYGFDQPAHV RYVEMLGRFA RFDLGRSFMF NKDVGTLILE KLPVSISLGL
WSFLISYLVS IPLGVAKAVH DGSRFDVATT LLVLVGYAIP GFVLGVLLIV LTAGGTYLDW
FPLRGLTSDN WADLTWPARI ADYFWHLALP LTCMVIGSFA VMTMLTKNTF VEEMRKQYVK
VARAKGLSAN RVLYKHIFRN ALIPLITGFP AAFVGAFFAG SVLIENLFSL DGLGQLGYEA
VIRRDYPVVL GSLYLFTLIG LVVKLVSDLL YVVVDPRVQF AKAAK
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