More than 300 homologs were found in PanDaTox collection
for query gene Nham_0380 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_4212  binding-protein-dependent transport systems inner membrane component  91.06 
 
 
369 aa  661    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.477185  n/a   
 
 
-
 
NC_007406  Nwi_0290  binding-protein dependent transport system inner membrane protein  94.85 
 
 
369 aa  712    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1772  binding-protein-dependent transport systems inner membrane component  90.24 
 
 
369 aa  658    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.02836 
 
 
-
 
NC_007925  RPC_3727  binding-protein-dependent transport systems inner membrane component  90.79 
 
 
369 aa  688    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3533  binding-protein-dependent transport systems inner membrane component  90.51 
 
 
369 aa  662    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0507851  normal 
 
 
-
 
NC_007964  Nham_0380  binding-protein-dependent transport systems inner membrane component  100 
 
 
369 aa  736    Nitrobacter hamburgensis X14  Bacteria  normal  0.530667  n/a   
 
 
-
 
NC_009485  BBta_7053  oligopeptide ABC transporter membrane protein  87.87 
 
 
370 aa  663    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.295774  normal 
 
 
-
 
NC_011894  Mnod_0516  binding-protein-dependent transport systems inner membrane component  75.48 
 
 
367 aa  572  1.0000000000000001e-162  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.968567  n/a   
 
 
-
 
NC_010511  M446_1614  binding-protein-dependent transport systems inner membrane component  74.39 
 
 
366 aa  560  1e-158  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.26731 
 
 
-
 
NC_009505  BOV_0008  ABC transporter, permease protein  73.17 
 
 
365 aa  547  1e-155  Brucella ovis ATCC 25840  Bacteria  hitchhiker  0.00620347  n/a   
 
 
-
 
NC_004310  BR0008  ABC transporter, permease protein  72.9 
 
 
365 aa  545  1e-154  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0013  binding-protein-dependent transport systems inner membrane component  73.44 
 
 
365 aa  544  1e-153  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0654461  n/a   
 
 
-
 
NC_009720  Xaut_2634  binding-protein-dependent transport systems inner membrane component  75.2 
 
 
371 aa  540  9.999999999999999e-153  Xanthobacter autotrophicus Py2  Bacteria  normal  0.177277  normal  0.471787 
 
 
-
 
NC_010505  Mrad2831_3641  binding-protein-dependent transport systems inner membrane component  70.92 
 
 
368 aa  530  1e-149  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0421438 
 
 
-
 
NC_009719  Plav_0247  binding-protein-dependent transport systems inner membrane component  72.55 
 
 
369 aa  529  1e-149  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3915  binding-protein-dependent transport systems inner membrane component  69.65 
 
 
363 aa  521  1e-147  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_3359  binding-protein-dependent transport systems inner membrane component  71.27 
 
 
363 aa  523  1e-147  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.710892  normal  0.120793 
 
 
-
 
NC_010725  Mpop_0423  binding-protein-dependent transport systems inner membrane component  71.39 
 
 
365 aa  519  1e-146  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0344  binding-protein-dependent transport systems inner membrane component  71.39 
 
 
365 aa  519  1e-146  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0389  binding-protein-dependent transport systems inner membrane component  71.39 
 
 
365 aa  519  1e-146  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0428619  normal  0.991349 
 
 
-
 
NC_008254  Meso_4082  binding-protein-dependent transport systems inner membrane component  69.92 
 
 
366 aa  509  1e-143  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_4133  binding-protein-dependent transport systems inner membrane component  67.75 
 
 
362 aa  504  9.999999999999999e-143  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0245  ABC transporter membrane spanning protein (peptide)  68.29 
 
 
363 aa  502  1e-141  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4447  binding-protein-dependent transport systems inner membrane component  67.75 
 
 
362 aa  504  1e-141  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.654672  normal  0.825965 
 
 
-
 
NC_009636  Smed_3365  binding-protein-dependent transport systems inner membrane component  65.58 
 
 
360 aa  499  1e-140  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2271  binding-protein-dependent transport systems inner membrane component  65.4 
 
 
363 aa  491  9.999999999999999e-139  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2180  binding-protein dependent transport system inner membrane protein  64.4 
 
 
357 aa  481  1e-135  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.776832 
 
 
-
 
NC_002947  PP_4148  binding-protein-dependent transport systems inner membrane component  64.4 
 
 
357 aa  478  1e-134  Pseudomonas putida KT2440  Bacteria  normal  0.0120356  normal 
 
 
-
 
NC_004578  PSPTO_3718  ABC transporter, permease protein  63.32 
 
 
357 aa  478  1e-134  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1757  binding-protein dependent transport system inner membrane protein  63.32 
 
 
357 aa  480  1e-134  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.443887  normal  0.0467925 
 
 
-
 
NC_009512  Pput_1717  binding-protein-dependent transport systems inner membrane component  64.67 
 
 
357 aa  480  1e-134  Pseudomonas putida F1  Bacteria  normal  0.552339  normal 
 
 
-
 
NC_010501  PputW619_3473  binding-protein-dependent transport systems inner membrane component  64.4 
 
 
357 aa  479  1e-134  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0596  binding-protein-dependent transport systems inner membrane component  62.87 
 
 
365 aa  476  1e-133  Halorhodospira halophila SL1  Bacteria  normal  0.639784  n/a   
 
 
-
 
NC_010322  PputGB1_3720  binding-protein-dependent transport systems inner membrane component  64.13 
 
 
357 aa  476  1e-133  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00285143  normal 
 
 
-
 
NC_009439  Pmen_2059  binding-protein-dependent transport systems inner membrane component  63.59 
 
 
357 aa  474  1e-132  Pseudomonas mendocina ymp  Bacteria  normal  0.270311  normal  0.8272 
 
 
-
 
NC_012560  Avin_29660  oligopeptide ABC transporter, inner membrane permease component  64.4 
 
 
361 aa  471  1e-132  Azotobacter vinelandii DJ  Bacteria  normal  0.124853  n/a   
 
 
-
 
NC_009656  PSPA7_3487  ABC transporter permease  62.77 
 
 
360 aa  468  9.999999999999999e-131  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0656  ABC peptide transporter  62.23 
 
 
365 aa  465  9.999999999999999e-131  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0534  putative peptide ABC transporter, permease protein  61.04 
 
 
360 aa  467  9.999999999999999e-131  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_41140  ABC transporter permease  62.77 
 
 
360 aa  467  9.999999999999999e-131  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1539  binding-protein-dependent transport systems inner membrane component  62.77 
 
 
361 aa  465  9.999999999999999e-131  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0179  binding-protein-dependent transport systems inner membrane component  62.23 
 
 
364 aa  463  1e-129  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0100071  normal 
 
 
-
 
NC_007963  Csal_1947  binding-protein-dependent transport systems inner membrane component  59.78 
 
 
354 aa  462  1e-129  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.162998  n/a   
 
 
-
 
NC_007493  RSP_0703  ABC peptide transporter, inner membrane subunit  64.03 
 
 
362 aa  459  9.999999999999999e-129  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2358  binding-protein-dependent transport systems inner membrane component  64.03 
 
 
362 aa  459  9.999999999999999e-129  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0883439 
 
 
-
 
NC_013421  Pecwa_1915  binding-protein-dependent transport systems inner membrane component  58.15 
 
 
364 aa  455  1e-127  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1349  binding-protein-dependent transport systems inner membrane component  62.23 
 
 
368 aa  457  1e-127  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.128685  n/a   
 
 
-
 
NC_010658  SbBS512_E0780  ABC transporter, permease protein  58.04 
 
 
364 aa  454  1e-127  Shigella boydii CDC 3083-94  Bacteria  normal  0.815718  n/a   
 
 
-
 
NC_012917  PC1_1644  binding-protein-dependent transport systems inner membrane component  57.34 
 
 
365 aa  456  1e-127  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.639895  n/a   
 
 
-
 
NC_009436  Ent638_2774  binding-protein-dependent transport systems inner membrane component  58.04 
 
 
364 aa  455  1e-127  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0290  ABC transporter substrate binding inner membrane protein  58.04 
 
 
358 aa  456  1e-127  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02108  predicted oligopeptide transporter subunit  58.04 
 
 
364 aa  454  1.0000000000000001e-126  Escherichia coli BL21(DE3)  Bacteria  normal  0.123294  n/a   
 
 
-
 
CP001637  EcDH1_1479  binding-protein-dependent transport systems inner membrane component  58.04 
 
 
364 aa  454  1.0000000000000001e-126  Escherichia coli DH1  Bacteria  normal  0.210696  n/a   
 
 
-
 
NC_010498  EcSMS35_2327  ABC transporter, permease protein  58.04 
 
 
364 aa  454  1.0000000000000001e-126  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.0047912 
 
 
-
 
NC_009800  EcHS_A2316  ABC transporter, permease protein  58.04 
 
 
364 aa  454  1.0000000000000001e-126  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3862  binding-protein-dependent transport systems inner membrane component  58.82 
 
 
384 aa  453  1.0000000000000001e-126  Jannaschia sp. CCS1  Bacteria  normal  0.619546  normal 
 
 
-
 
NC_009428  Rsph17025_0527  binding-protein-dependent transport systems inner membrane component  62.94 
 
 
362 aa  454  1.0000000000000001e-126  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.169585  normal  0.218221 
 
 
-
 
NC_010468  EcolC_1469  binding-protein-dependent transport systems inner membrane component  58.04 
 
 
364 aa  454  1.0000000000000001e-126  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.00000191994  normal  0.0382129 
 
 
-
 
NC_008044  TM1040_2551  binding-protein-dependent transport systems inner membrane component  63.03 
 
 
362 aa  454  1.0000000000000001e-126  Ruegeria sp. TM1040  Bacteria  normal  0.280481  normal  0.0903664 
 
 
-
 
NC_011353  ECH74115_3316  ABC transporter, permease protein  58.04 
 
 
364 aa  454  1.0000000000000001e-126  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.655724  normal  0.226821 
 
 
-
 
NC_009708  YpsIP31758_2712  ABC transporter, permease protein  57.99 
 
 
366 aa  451  1.0000000000000001e-126  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3247  binding-protein-dependent transport systems inner membrane component  58.97 
 
 
364 aa  452  1.0000000000000001e-126  Serratia proteamaculans 568  Bacteria  normal  0.559652  normal  0.0140397 
 
 
-
 
NC_010465  YPK_2787  binding-protein-dependent transport systems inner membrane component  57.99 
 
 
366 aa  451  1.0000000000000001e-126  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.399987  n/a   
 
 
-
 
NC_010159  YpAngola_A1496  ABC transporter permease  57.99 
 
 
366 aa  451  1.0000000000000001e-126  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2476  ABC transporter, permease protein  58.04 
 
 
364 aa  453  1.0000000000000001e-126  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2411  inner membrane ABC transporter permease protein YejB  58.04 
 
 
364 aa  449  1e-125  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.026734 
 
 
-
 
NC_011149  SeAg_B2366  inner membrane ABC transporter permease protein YejB  58.04 
 
 
364 aa  449  1e-125  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0667635  n/a   
 
 
-
 
NC_011205  SeD_A2568  inner membrane ABC transporter permease YejB  58.04 
 
 
364 aa  448  1e-125  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0013511 
 
 
-
 
NC_011094  SeSA_A2457  inner membrane ABC transporter permease YejB  58.04 
 
 
364 aa  449  1e-125  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0971989  normal  0.973927 
 
 
-
 
NC_011083  SeHA_C2454  inner membrane ABC transporter permease YejB  57.77 
 
 
364 aa  447  1.0000000000000001e-124  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.000000645449 
 
 
-
 
NC_007643  Rru_A3167  binding-protein dependent transport system inner membrane protein  62.5 
 
 
367 aa  441  1e-123  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.127816  n/a   
 
 
-
 
NC_002947  PP_3077  binding-protein-dependent transport systems inner membrane component  57.49 
 
 
352 aa  439  9.999999999999999e-123  Pseudomonas putida KT2440  Bacteria  normal  normal  0.837168 
 
 
-
 
NC_012912  Dd1591_2433  binding-protein-dependent transport systems inner membrane component  57.07 
 
 
365 aa  438  9.999999999999999e-123  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2714  binding-protein-dependent transport systems inner membrane component  57.77 
 
 
352 aa  441  9.999999999999999e-123  Pseudomonas putida W619  Bacteria  normal  normal  0.124868 
 
 
-
 
NC_009512  Pput_2647  binding-protein-dependent transport systems inner membrane component  57.22 
 
 
352 aa  438  9.999999999999999e-123  Pseudomonas putida F1  Bacteria  normal  0.783246  normal 
 
 
-
 
NC_008686  Pden_1806  binding-protein-dependent transport systems inner membrane component  56.67 
 
 
379 aa  438  9.999999999999999e-123  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.136814 
 
 
-
 
NC_012880  Dd703_2337  binding-protein-dependent transport systems inner membrane component  56.52 
 
 
364 aa  435  1e-121  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2903  binding-protein dependent transport system inner membrane protein  57.88 
 
 
354 aa  435  1e-121  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00817715  normal  0.390731 
 
 
-
 
NC_008463  PA14_37870  putative peptide ABC transporter, permease protein  56.79 
 
 
357 aa  431  1e-120  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000955556  normal  0.178623 
 
 
-
 
NC_009379  Pnuc_1236  binding-protein-dependent transport systems inner membrane component  56.87 
 
 
354 aa  428  1e-119  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3030  peptide ABC transporter, permease protein  57.34 
 
 
354 aa  429  1e-119  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.175953  n/a   
 
 
-
 
NC_007492  Pfl01_3119  binding-protein dependent transport system inner membrane protein  57.34 
 
 
354 aa  427  1e-118  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0449  putative peptide transport system permease protein  55.95 
 
 
373 aa  425  1e-118  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3074  binding-protein dependent transport system inner membrane protein  56.52 
 
 
353 aa  422  1e-117  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2742  binding-protein-dependent transport systems inner membrane component  54.25 
 
 
344 aa  418  1e-116  Variovorax paradoxus S110  Bacteria  normal  0.564581  n/a   
 
 
-
 
NC_007948  Bpro_2421  binding-protein-dependent transport systems inner membrane component  55.07 
 
 
344 aa  419  1e-116  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00114687  normal 
 
 
-
 
NC_010322  PputGB1_2789  binding-protein-dependent transport systems inner membrane component  57.22 
 
 
352 aa  421  1e-116  Pseudomonas putida GB-1  Bacteria  normal  0.0469446  normal  0.12532 
 
 
-
 
NC_008576  Mmc1_2154  binding-protein-dependent transport systems inner membrane component  57.53 
 
 
350 aa  419  1e-116  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.431982 
 
 
-
 
NC_008781  Pnap_2016  binding-protein-dependent transport systems inner membrane component  55.89 
 
 
344 aa  418  1e-116  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.887108 
 
 
-
 
NC_007908  Rfer_2129  binding-protein-dependent transport systems inner membrane component  55.07 
 
 
344 aa  412  1e-114  Rhodoferax ferrireducens T118  Bacteria  normal  0.291354  n/a   
 
 
-
 
NC_013422  Hneap_0396  binding-protein-dependent transport systems inner membrane component  57.1 
 
 
354 aa  414  1e-114  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3742  binding-protein dependent transport system inner membrane protein  57.34 
 
 
354 aa  405  1.0000000000000001e-112  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.234646  normal  0.979022 
 
 
-
 
NC_010002  Daci_2974  binding-protein-dependent transport systems inner membrane component  53.7 
 
 
342 aa  402  1e-111  Delftia acidovorans SPH-1  Bacteria  normal  0.552398  normal 
 
 
-
 
NC_010531  Pnec_1103  binding-protein-dependent transport systems inner membrane component  56.28 
 
 
358 aa  401  1e-111  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2128  binding-protein dependent transport system inner membrane protein  55.74 
 
 
350 aa  398  9.999999999999999e-111  Ralstonia eutropha JMP134  Bacteria  normal  0.385957  n/a   
 
 
-
 
NC_010681  Bphyt_2500  binding-protein-dependent transport systems inner membrane component  56.79 
 
 
345 aa  398  9.999999999999999e-111  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0191785  normal  0.0206964 
 
 
-
 
NC_004578  PSPTO_0266  peptide ABC transporter, permease protein  55.98 
 
 
355 aa  395  1e-109  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1542  binding-protein-dependent transport systems inner membrane component  54.08 
 
 
352 aa  396  1e-109  Methylobacillus flagellatus KT  Bacteria  normal  0.74003  normal  0.452756 
 
 
-
 
NC_007951  Bxe_A1637  ABC peptide transporter, inner membrane subunit  55.71 
 
 
345 aa  396  1e-109  Burkholderia xenovorans LB400  Bacteria  normal  0.648202  normal  0.318212 
 
 
-
 
NC_010622  Bphy_1382  binding-protein-dependent transport systems inner membrane component  55.98 
 
 
346 aa  395  1e-109  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.00200208  normal 
 
 
-
 
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