More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0084 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  100 
 
 
239 aa  468  1.0000000000000001e-131  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  71.89 
 
 
229 aa  313  1.9999999999999998e-84  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  53.77 
 
 
226 aa  212  4.9999999999999996e-54  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  53.52 
 
 
216 aa  210  2e-53  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  52.34 
 
 
218 aa  209  4e-53  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  53.88 
 
 
224 aa  207  2e-52  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  52.36 
 
 
220 aa  206  4e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  51.87 
 
 
217 aa  204  1e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  51.89 
 
 
212 aa  204  1e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  50.93 
 
 
214 aa  201  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  48.34 
 
 
218 aa  199  1.9999999999999998e-50  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  48.64 
 
 
223 aa  200  1.9999999999999998e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  48.58 
 
 
218 aa  199  3e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  50.23 
 
 
215 aa  198  6e-50  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  50.47 
 
 
215 aa  198  7.999999999999999e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  51.42 
 
 
213 aa  197  1.0000000000000001e-49  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  51.17 
 
 
221 aa  197  1.0000000000000001e-49  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  49.53 
 
 
218 aa  196  3e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  49.1 
 
 
221 aa  192  3e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  51.42 
 
 
213 aa  191  9e-48  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50 
 
 
218 aa  190  2e-47  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  48.58 
 
 
215 aa  189  4e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  49.07 
 
 
215 aa  189  5e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  48.37 
 
 
218 aa  189  5e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  50.23 
 
 
215 aa  188  5.999999999999999e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  48.34 
 
 
214 aa  188  5.999999999999999e-47  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  46.95 
 
 
214 aa  187  1e-46  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  52.11 
 
 
213 aa  186  2e-46  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  49.09 
 
 
219 aa  186  3e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  50.23 
 
 
213 aa  186  4e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  50 
 
 
210 aa  186  4e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  48.11 
 
 
217 aa  184  7e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  51.17 
 
 
221 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  50.47 
 
 
218 aa  184  1.0000000000000001e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  45.79 
 
 
243 aa  183  2.0000000000000003e-45  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  46.64 
 
 
226 aa  183  2.0000000000000003e-45  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  51.89 
 
 
225 aa  183  2.0000000000000003e-45  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  45.79 
 
 
214 aa  182  3e-45  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  45.79 
 
 
214 aa  182  3e-45  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  51.17 
 
 
213 aa  182  4.0000000000000006e-45  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  46.23 
 
 
215 aa  182  5.0000000000000004e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  46.98 
 
 
220 aa  182  5.0000000000000004e-45  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  45.79 
 
 
214 aa  181  1e-44  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  49.53 
 
 
257 aa  179  2e-44  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  47.22 
 
 
219 aa  179  2e-44  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  48.6 
 
 
213 aa  180  2e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  47.6 
 
 
209 aa  178  4.999999999999999e-44  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  45.71 
 
 
211 aa  177  1e-43  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  50 
 
 
222 aa  176  2e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  47.2 
 
 
214 aa  176  3e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  48.83 
 
 
209 aa  175  5e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  49.09 
 
 
218 aa  175  5e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.86 
 
 
217 aa  175  7e-43  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  44.13 
 
 
215 aa  174  9.999999999999999e-43  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  49.52 
 
 
233 aa  174  9.999999999999999e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  46.76 
 
 
214 aa  174  9.999999999999999e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  43.72 
 
 
217 aa  173  1.9999999999999998e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  46.23 
 
 
214 aa  173  1.9999999999999998e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  47.42 
 
 
215 aa  174  1.9999999999999998e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  48.36 
 
 
215 aa  171  1e-41  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  49.53 
 
 
214 aa  171  1e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  45.62 
 
 
219 aa  170  2e-41  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  49.07 
 
 
213 aa  170  2e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  48.61 
 
 
221 aa  170  2e-41  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  49.07 
 
 
220 aa  169  3e-41  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  45.19 
 
 
242 aa  169  3e-41  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  45.07 
 
 
216 aa  169  4e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  44.65 
 
 
218 aa  167  2e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  47.62 
 
 
212 aa  167  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  47.17 
 
 
214 aa  166  2.9999999999999998e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  46.76 
 
 
220 aa  166  2.9999999999999998e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  47.22 
 
 
218 aa  163  2.0000000000000002e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  44.64 
 
 
235 aa  162  4.0000000000000004e-39  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.28 
 
 
213 aa  162  5.0000000000000005e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  48.37 
 
 
223 aa  162  6e-39  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  42.92 
 
 
214 aa  161  8.000000000000001e-39  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  49.55 
 
 
228 aa  160  2e-38  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  46.51 
 
 
228 aa  159  5e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45 
 
 
239 aa  158  8e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  42.45 
 
 
214 aa  156  3e-37  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  46.36 
 
 
226 aa  154  1e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  46.01 
 
 
216 aa  154  1e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.89 
 
 
226 aa  152  4e-36  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  41.98 
 
 
815 aa  148  6e-35  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  40.74 
 
 
220 aa  147  1.0000000000000001e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  44.39 
 
 
214 aa  147  1.0000000000000001e-34  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  47.17 
 
 
214 aa  145  5e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  45.36 
 
 
215 aa  144  9e-34  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  42.52 
 
 
222 aa  144  1e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.25 
 
 
211 aa  144  1e-33  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  45.75 
 
 
208 aa  143  2e-33  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  39.35 
 
 
228 aa  143  2e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  44.34 
 
 
216 aa  139  6e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  39.27 
 
 
228 aa  133  1.9999999999999998e-30  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  40.31 
 
 
463 aa  119  4.9999999999999996e-26  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_009921  Franean1_2502  response regulator receiver protein  39.18 
 
 
233 aa  114  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.0151359  normal 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  38.12 
 
 
225 aa  110  2.0000000000000002e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  33.67 
 
 
224 aa  109  3e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  33.79 
 
 
214 aa  109  4.0000000000000004e-23  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  35.78 
 
 
216 aa  107  1e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
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