More than 300 homologs were found in PanDaTox collection
for query gene Franean1_2502 on replicon NC_009921
Organism: Frankia sp. EAN1pec



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_2502  response regulator receiver protein  100 
 
 
233 aa  439  9.999999999999999e-123  Frankia sp. EAN1pec  Bacteria  normal  0.0151359  normal 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  42.52 
 
 
218 aa  132  3e-30  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  41.75 
 
 
229 aa  119  3.9999999999999996e-26  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  39.5 
 
 
218 aa  104  1e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  45.09 
 
 
219 aa  102  6e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  37.02 
 
 
215 aa  102  8e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  37.09 
 
 
220 aa  100  2e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  45.61 
 
 
224 aa  99.8  3e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  42.94 
 
 
214 aa  99.4  4e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  39.18 
 
 
239 aa  99.4  5e-20  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  38.94 
 
 
226 aa  97.8  1e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  35.68 
 
 
217 aa  96.7  3e-19  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  38.53 
 
 
221 aa  96.3  4e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  38.5 
 
 
210 aa  95.9  4e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  37.38 
 
 
214 aa  96.3  4e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  41.52 
 
 
214 aa  95.5  6e-19  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  40.23 
 
 
217 aa  95.5  6e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  38.35 
 
 
218 aa  94.7  1e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  39.41 
 
 
218 aa  94  2e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  35.98 
 
 
218 aa  93.6  2e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  39.44 
 
 
209 aa  93.2  3e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  40.83 
 
 
214 aa  92.4  5e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  40.65 
 
 
214 aa  92.4  5e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  42.44 
 
 
213 aa  92.4  6e-18  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  34.27 
 
 
218 aa  91.7  8e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  38.32 
 
 
213 aa  91.3  1e-17  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  36.15 
 
 
215 aa  91.3  1e-17  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  41.18 
 
 
213 aa  90.1  3e-17  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  39.16 
 
 
242 aa  90.1  3e-17  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  35.27 
 
 
223 aa  88.6  8e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  34.05 
 
 
214 aa  88.6  8e-17  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  34.05 
 
 
214 aa  88.6  8e-17  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  39.08 
 
 
216 aa  88.2  9e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  37.56 
 
 
218 aa  88.2  1e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  38.1 
 
 
233 aa  87.8  1e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  34.27 
 
 
221 aa  88.2  1e-16  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  37.28 
 
 
226 aa  86.3  4e-16  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.48 
 
 
211 aa  85.5  7e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  37.43 
 
 
215 aa  85.1  8e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  36.77 
 
 
219 aa  84.3  0.000000000000001  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  38.24 
 
 
217 aa  84.3  0.000000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  37.57 
 
 
215 aa  84.7  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  38.79 
 
 
213 aa  84.7  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  34.95 
 
 
217 aa  84  0.000000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  39.41 
 
 
215 aa  84  0.000000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  33.7 
 
 
211 aa  83.2  0.000000000000003  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  33.66 
 
 
214 aa  83.6  0.000000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  40.11 
 
 
218 aa  83.2  0.000000000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  38.65 
 
 
223 aa  81.6  0.000000000000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  35.89 
 
 
213 aa  81.6  0.00000000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  38.01 
 
 
214 aa  81.3  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  37.04 
 
 
214 aa  80.9  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  33.18 
 
 
212 aa  80.1  0.00000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  38.89 
 
 
228 aa  79.7  0.00000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  37.06 
 
 
214 aa  79.7  0.00000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.66 
 
 
213 aa  79.3  0.00000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  36.42 
 
 
815 aa  79.3  0.00000000000005  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  42.11 
 
 
214 aa  79.3  0.00000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  35.35 
 
 
216 aa  79  0.00000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  37.84 
 
 
219 aa  78.6  0.00000000000007  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  38.04 
 
 
215 aa  78.6  0.00000000000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  36.69 
 
 
220 aa  78.2  0.00000000000009  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  37.21 
 
 
215 aa  77.4  0.0000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.6 
 
 
226 aa  77  0.0000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  40.94 
 
 
213 aa  76.6  0.0000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  34.71 
 
 
215 aa  76.3  0.0000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  33.7 
 
 
209 aa  76.3  0.0000000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  35.29 
 
 
214 aa  75.9  0.0000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  32.94 
 
 
243 aa  74.7  0.000000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.47 
 
 
239 aa  73.9  0.000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  38.46 
 
 
213 aa  73.9  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  41.82 
 
 
215 aa  74.3  0.000000000002  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  36.59 
 
 
221 aa  73.9  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  34.88 
 
 
214 aa  73.2  0.000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  41.3 
 
 
220 aa  72.8  0.000000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  34.76 
 
 
215 aa  72.4  0.000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  34.95 
 
 
218 aa  71.6  0.000000000008  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6440  adenylate/guanylate cyclase  35.06 
 
 
463 aa  71.2  0.00000000001  Frankia sp. EAN1pec  Bacteria  normal  0.084335  normal  0.0956308 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  39.1 
 
 
222 aa  71.2  0.00000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  31.76 
 
 
235 aa  69.3  0.00000000005  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  40.87 
 
 
225 aa  69.3  0.00000000005  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  36.53 
 
 
216 aa  68.6  0.00000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  37.43 
 
 
228 aa  68.6  0.00000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  32.72 
 
 
208 aa  68.6  0.00000000008  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  35.15 
 
 
222 aa  67.4  0.0000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  37.06 
 
 
218 aa  65.5  0.0000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  31.21 
 
 
220 aa  65.9  0.0000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  34.11 
 
 
221 aa  65.5  0.0000000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  37.64 
 
 
218 aa  65.1  0.0000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  34.46 
 
 
220 aa  65.1  0.0000000009  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_009972  Haur_4648  two component LuxR family transcriptional regulator  33.89 
 
 
219 aa  63.9  0.000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  30.81 
 
 
1648 aa  63.5  0.000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  36.55 
 
 
216 aa  62.8  0.000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  37.72 
 
 
257 aa  62.8  0.000000005  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  31.79 
 
 
228 aa  62  0.000000008  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  38.73 
 
 
207 aa  60.5  0.00000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  29.36 
 
 
228 aa  60.1  0.00000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  34.09 
 
 
227 aa  58.9  0.00000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  38.01 
 
 
212 aa  58.2  0.0000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1435  two component LuxR family transcriptional regulator  36.87 
 
 
218 aa  58.2  0.0000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>