42 homologs were found in PanDaTox collection
for query gene Spro_3050 on replicon NC_009832
Organism: Serratia proteamaculans 568



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009832  Spro_3050  LuxR family transcriptional regulator  100 
 
 		 209 aa  434  1e-121  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
-
 
CP001637  EcDH1_1697  transcriptional regulator, LuxR family  68.1 
 
 		 207 aa  293  1e-78  Escherichia coli DH1  Bacteria  hitchhiker  0.000000000115016  n/a   
 
 
-
 
NC_011353  ECH74115_2728  colanic acid capsular biosynthesis activation protein A  68.1 
 
 		 207 aa  293  1e-78  Escherichia coli O157:H7 str. EC4115  Bacteria  unclonable  0.00000000830515  normal  0.480733 
 
 
-
 
NC_010498  EcSMS35_1233  colanic acid capsular biosynthesis activation protein A  67.62 
 
 		 207 aa  290  8e-78  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000000132181  normal  1 
 
 
-
 
NC_009801  EcE24377A_2184  colanic acid capsular biosynthesis activation protein A  67.62 
 
 		 207 aa  290  8e-78  Escherichia coli E24377A  Bacteria  hitchhiker  0.00000000000916169  n/a   
 
 
-
 
NC_010468  EcolC_1691  LuxR family transcriptional regulator  67.62 
 
 		 207 aa  290  9e-78  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000000265916  hitchhiker  0.00232643 
 
 
-
 
NC_009436  Ent638_2542  response regulator receiver protein  65.07 
 
 		 207 aa  290  1e-77  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000537034  normal  1 
 
 
-
 
NC_009800  EcHS_A2051  colanic acid capsular biosynthesis activation protein A  67.14 
 
 		 207 aa  289  2e-77  Escherichia coli HS  Bacteria  decreased coverage  4.74459e-16  n/a   
 
 
-
 
NC_011080  SNSL254_A2145  colanic acid capsular biosynthesis activation protein A  64.11 
 
 		 207 aa  279  2e-74  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000312117  hitchhiker  0.00586911 
 
 
-
 
NC_011083  SeHA_C2199  colanic acid capsular biosynthesis activation protein A  64.11 
 
 		 207 aa  279  2e-74  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.283228  normal  0.62751 
 
 
-
 
NC_011205  SeD_A1259  colanic acid capsular biosynthesis activation protein A  64.11 
 
 		 207 aa  279  2e-74  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0272351  normal  0.751941 
 
 
-
 
NC_011149  SeAg_B1137  colanic acid capsular biosynthesis activation protein A  63.64 
 
 		 207 aa  278  4e-74  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00000000192642  n/a   
 
 
-
 
NC_011094  SeSA_A2141  colanic acid capsular biosynthesis activation protein A  63.16 
 
 		 207 aa  277  9e-74  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  hitchhiker  0.000944438  normal  0.224442 
 
 
-
 
NC_010658  SbBS512_E1072  colanic acid capsular biosynthesis activation protein A  65.85 
 
 		 203 aa  271  5.000000000000001e-72  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000000000307954  n/a   
 
 
-
 
NC_009436  Ent638_0336  two component LuxR family transcriptional regulator  24.32 
 
 		 199 aa  66.6  0.0000000003  Enterobacter sp. 638  Bacteria  normal  1  unclonable  0.00000245981 
 
 
-
 
NC_009832  Spro_1891  LuxR family transcriptional regulator  20.42 
 
 		 208 aa  56.2  0.0000003  Serratia proteamaculans 568  Bacteria  normal  1  hitchhiker  0.000479557 
 
 
-
 
NC_009708  YpsIP31758_1563  LuxR family transcriptional regulator  21.72 
 
 		 194 aa  50.4  0.00002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.241768  n/a   
 
 
-
 
NC_010465  YPK_1671  LuxR family transcriptional regulator  21.72 
 
 		 194 aa  50.4  0.00002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  23.2 
 
 		 214 aa  49.7  0.00004  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  29.29 
 
 		 216 aa  47.8  0.0001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal  1 
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  30.93 
 
 		 216 aa  46.2  0.0003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  32.56 
 
 		 218 aa  45.8  0.0004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  24.16 
 
 		 223 aa  45.8  0.0005  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  22.78 
 
 		 214 aa  45.4  0.0006  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_010322  PputGB1_2528  two component LuxR family transcriptional regulator  25.44 
 
 		 204 aa  45.1  0.0007  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.0522002 
 
 
-
 
NC_002947  PP_3412  LuxR family DNA-binding response regulator  26.63 
 
 		 204 aa  45.1  0.0009  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.338288 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  20.56 
 
 		 224 aa  44.7  0.001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  23.67 
 
 		 216 aa  44.7  0.001  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  23.76 
 
 		 264 aa  44.3  0.001  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  22.38 
 
 		 206 aa  43.5  0.002  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  21.63 
 
 		 214 aa  43.1  0.003  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_010159  YpAngola_A1707  LuxR family transcriptional regulator  23.7 
 
 		 204 aa  42.7  0.003  Yersinia pestis Angola  Bacteria  normal  0.0182424  hitchhiker  0.000162083 
 
 
-
 
NC_013093  Amir_3004  two component transcriptional regulator, LuxR family  28.4 
 
 		 223 aa  43.1  0.003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0522265  n/a   
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  22.22 
 
 		 218 aa  42.7  0.003  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013165  Shel_16610  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.73 
 
 		 491 aa  43.1  0.003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.0119595  normal  0.714327 
 
 
-
 
NC_010002  Daci_3380  two component LuxR family transcriptional regulator  26.47 
 
 		 259 aa  42.4  0.005  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.277634 
 
 
-
 
NC_009512  Pput_2350  two component LuxR family transcriptional regulator  26.04 
 
 		 204 aa  42.4  0.005  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013204  Elen_0368  transcriptional regulator, LuxR family  30.23 
 
 		 516 aa  42.4  0.005  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  30.3 
 
 		 229 aa  42.4  0.005  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_011094  SeSA_A4606  transcriptional regulatory protein  22.63 
 
 		 214 aa  42  0.006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  0.35086 
 
 
-
 
NC_008255  CHU_1317  response regulator  21.08 
 
 		 220 aa  42  0.007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_007333  Tfu_2582  LuxR response regulator receiver  20.81 
 
 		 233 aa  41.6  0.008  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
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