Gene SbBS512_E1072 details

Gene Information

• Locus tag: SbBS512_E1072
• Symbol: rcsA
• ID: 6269052
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 978652
• End bp: 979263
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 641725211
• Product: colanic acid capsular biosynthesis activation protein A
• Protein accession: YP_001879730
• Protein GI: 187730730
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000000000307954
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAACGA TTATTATGGA TTTATGTAGT TACACCCGAC TAGGTTTAAC CGGGTATCTG 
TTGAGTAGAG GGGTTAAAAA AAGAGAAATC AACGACATTG AAACCGTTGA TGACCTTGCC 
ATAGCTTGTG ATTCACAGCG CCCTTCAGTG GTGTTTATTA ATGAGGACTG TTTCATCCAT 
GATGCTTCTA ACAGTCAGCA CATCAAGCAC ATCAAGCACA TCATTAATCA ACATCCCAAT 
ACGTTATTTA TCGTTTTTAT GGCAATTGCC AATGTTCATT TTGATGAATA TCTATTGGCC 
AGAAAAAATT TATTGATAAG TTCTAAATCG ATTAAACCGG AATCTCTCGA CAATATCCTT 
GGCGATATTC TGAAAAAAGA GACAACGATA ACCTCTTTTT TAAATATGCC GACGTTATCA 
TTGAGCCGAA CCGAATCGAG TATGTTGCGA ATGTGGATGG CAGGTCAGGG AACCATTCAA 
ATCTCTGACC AAATGAATAT CAAAGCCAAG ACCGTTTCAT CGCATAAAGG TAATATTAAA 
CGTAAGATCA AAACGCATAA TAAACAGGTT ATCTACCATG TCGTCCGACT GACGGATAAT 
GTGACTAGGT GA 

 

Protein sequence

MSTIIMDLCS YTRLGLTGYL LSRGVKKREI NDIETVDDLA IACDSQRPSV VFINEDCFIH 
DASNSQHIKH IKHIINQHPN TLFIVFMAIA NVHFDEYLLA RKNLLISSKS IKPESLDNIL 
GDILKKETTI TSFLNMPTLS LSRTESSMLR MWMAGQGTIQ ISDQMNIKAK TVSSHKGNIK 
RKIKTHNKQV IYHVVRLTDN VTR