More than 300 homologs were found in PanDaTox collection
for query gene Smed_3311 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_3311  glycine cleavage T protein (aminomethyl transferase)  100 
 
 
377 aa  781    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5644  glycine cleavage T protein (aminomethyl transferase)  92.31 
 
 
377 aa  729    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.457364  normal 
 
 
-
 
NC_012858  Rleg_6580  glycine cleavage T protein (aminomethyl transferase)  92.31 
 
 
377 aa  728    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.852509  normal  0.0314164 
 
 
-
 
NC_009439  Pmen_3456  glycine cleavage T protein (aminomethyl transferase)  69.5 
 
 
376 aa  548  1e-155  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5971  glycine cleavage T protein (aminomethyl transferase)  68.7 
 
 
376 aa  543  1e-153  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132187 
 
 
-
 
NC_010524  Lcho_0173  glycine cleavage T protein (aminomethyl transferase)  66.13 
 
 
376 aa  533  1e-150  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_0923  glycine cleavage T protein (aminomethyl transferase)  40.27 
 
 
379 aa  269  5e-71  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0439  aminomethyltransferase  39.51 
 
 
372 aa  254  1.0000000000000001e-66  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.525568 
 
 
-
 
NC_011666  Msil_3605  glycine cleavage T protein (aminomethyl transferase)  37.7 
 
 
378 aa  252  8.000000000000001e-66  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_3187  glycine cleavage T protein (aminomethyl transferase)  39.77 
 
 
376 aa  242  7.999999999999999e-63  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.149022 
 
 
-
 
NC_010625  Bphy_5961  glycine cleavage T protein (aminomethyl transferase)  37.27 
 
 
370 aa  235  9e-61  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0205836 
 
 
-
 
NC_011666  Msil_3603  glycine cleavage T protein (aminomethyl transferase)  32.55 
 
 
761 aa  175  9.999999999999999e-43  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_3460  glycine cleavage T protein (aminomethyl transferase)  32.58 
 
 
781 aa  173  3.9999999999999995e-42  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3184  glycine cleavage T protein (aminomethyl transferase)  31.43 
 
 
772 aa  167  4e-40  Xanthobacter autotrophicus Py2  Bacteria  normal  0.932347  normal  0.101013 
 
 
-
 
NC_010524  Lcho_0155  glycine cleavage T protein (aminomethyl transferase)  31.38 
 
 
790 aa  163  4.0000000000000004e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009636  Smed_3316  glycine cleavage T protein (aminomethyl transferase)  32.86 
 
 
789 aa  162  6e-39  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_5134  aminomethyltransferase  31.44 
 
 
757 aa  159  1e-37  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6592  glycine cleavage T protein (aminomethyl transferase)  32.39 
 
 
789 aa  158  2e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.00642843 
 
 
-
 
NC_010184  BcerKBAB4_4082  glycine cleavage system aminomethyltransferase T  29.65 
 
 
366 aa  157  2e-37  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1202  glycine cleavage T protein (aminomethyl transferase)  29.79 
 
 
752 aa  157  2e-37  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5656  glycine cleavage T protein (aminomethyl transferase)  30.81 
 
 
789 aa  156  4e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.240642  normal 
 
 
-
 
NC_006274  BCZK3981  glycine cleavage system aminomethyltransferase T  29.38 
 
 
366 aa  155  9e-37  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4305  glycine cleavage system aminomethyltransferase T  29.38 
 
 
366 aa  155  2e-36  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2915  glycine cleavage system aminomethyltransferase T  29.11 
 
 
366 aa  154  2e-36  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.75153  n/a   
 
 
-
 
NC_011658  BCAH187_A4358  glycine cleavage system aminomethyltransferase T  29.38 
 
 
366 aa  155  2e-36  Bacillus cereus AH187  Bacteria  normal  0.51819  n/a   
 
 
-
 
NC_008009  Acid345_2461  glycine cleavage system aminomethyltransferase T  28.76 
 
 
380 aa  152  8e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2361  glycine cleavage system aminomethyltransferase T  31.46 
 
 
364 aa  150  4e-35  Geobacillus sp. WCH70  Bacteria  normal  0.365627  n/a   
 
 
-
 
NC_011772  BCG9842_B0901  glycine cleavage system aminomethyltransferase T  28.84 
 
 
366 aa  149  1.0000000000000001e-34  Bacillus cereus G9842  Bacteria  normal  0.281219  normal 
 
 
-
 
NC_011773  BCAH820_4247  glycine cleavage system aminomethyltransferase T  28.84 
 
 
366 aa  148  2.0000000000000003e-34  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS4131  glycine cleavage system aminomethyltransferase T  28.84 
 
 
366 aa  148  2.0000000000000003e-34  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3971  glycine cleavage system aminomethyltransferase T  28.84 
 
 
366 aa  148  2.0000000000000003e-34  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1526  glycine cleavage system T protein  30.42 
 
 
371 aa  147  2.0000000000000003e-34  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.293085 
 
 
-
 
NC_007530  GBAA_4449  glycine cleavage system aminomethyltransferase T  28.84 
 
 
366 aa  148  2.0000000000000003e-34  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.268637  n/a   
 
 
-
 
NC_010001  Cphy_1538  glycine cleavage system T protein  29.25 
 
 
360 aa  147  2.0000000000000003e-34  Clostridium phytofermentans ISDg  Bacteria  normal  0.641003  n/a   
 
 
-
 
NC_011899  Hore_23440  glycine cleavage system T protein  29.92 
 
 
357 aa  145  8.000000000000001e-34  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000137386  n/a   
 
 
-
 
NC_007760  Adeh_1245  glycine cleavage system aminomethyltransferase T  29.67 
 
 
360 aa  145  1e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4039  glycine cleavage system T protein  32.13 
 
 
365 aa  144  2e-33  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000142158  n/a   
 
 
-
 
NC_009718  Fnod_0976  glycine cleavage system aminomethyltransferase T  27.47 
 
 
430 aa  144  2e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0426  glycine cleavage system T protein  30.71 
 
 
372 aa  144  2e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.473658  normal 
 
 
-
 
NC_009675  Anae109_2522  glycine cleavage system aminomethyltransferase T  29.78 
 
 
360 aa  144  3e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.167801 
 
 
-
 
NC_013525  Tter_1496  glycine cleavage system T protein  29.41 
 
 
371 aa  144  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_3299  glycine cleavage system T protein  30.65 
 
 
389 aa  142  9.999999999999999e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.212433  normal  0.550694 
 
 
-
 
NC_010003  Pmob_1912  glycine cleavage system aminomethyltransferase T  29.75 
 
 
441 aa  141  1.9999999999999998e-32  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.0000389017  n/a   
 
 
-
 
NC_013411  GYMC61_0214  glycine cleavage system aminomethyltransferase T  31.04 
 
 
364 aa  141  1.9999999999999998e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011725  BCB4264_A4339  glycine cleavage system aminomethyltransferase T  28.69 
 
 
366 aa  141  1.9999999999999998e-32  Bacillus cereus B4264  Bacteria  normal  0.485786  n/a   
 
 
-
 
NC_009486  Tpet_0713  glycine cleavage system aminomethyltransferase T  28.16 
 
 
364 aa  140  3.9999999999999997e-32  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0961  glycine cleavage system T protein  29.01 
 
 
364 aa  140  3.9999999999999997e-32  Thermobispora bispora DSM 43833  Bacteria  normal  0.132468  normal  0.780252 
 
 
-
 
NC_014148  Plim_2455  glycine cleavage system T protein  30.66 
 
 
363 aa  140  4.999999999999999e-32  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2714  glycine cleavage system aminomethyltransferase T  29.4 
 
 
360 aa  139  7.999999999999999e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2620  glycine cleavage system aminomethyltransferase T  29.12 
 
 
360 aa  138  1e-31  Anaeromyxobacter sp. K  Bacteria  normal  0.398044  n/a   
 
 
-
 
NC_010320  Teth514_0232  glycine cleavage system aminomethyltransferase T  29.27 
 
 
368 aa  137  3.0000000000000003e-31  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0737  glycine cleavage system aminomethyltransferase T  27.19 
 
 
364 aa  135  9.999999999999999e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1800  glycine cleavage system T protein  28.14 
 
 
367 aa  135  9.999999999999999e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2285  glycine cleavage system T protein  27.81 
 
 
370 aa  135  1.9999999999999998e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00010894 
 
 
-
 
NC_013521  Sked_00490  aminomethyltransferase  29.29 
 
 
381 aa  133  3.9999999999999996e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.155954 
 
 
-
 
NC_014212  Mesil_2005  glycine cleavage system T protein  28.93 
 
 
350 aa  132  1.0000000000000001e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  0.55358  normal 
 
 
-
 
NC_009253  Dred_0720  glycine cleavage system T protein  28.65 
 
 
364 aa  131  2.0000000000000002e-29  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_13330  glycine cleavage system aminomethyltransferase T  27.97 
 
 
370 aa  131  2.0000000000000002e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_0289  glycine cleavage system aminomethyltransferase T  29.81 
 
 
383 aa  131  2.0000000000000002e-29  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.00965774  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1904  glycine cleavage system aminomethyltransferase T  29.81 
 
 
383 aa  131  2.0000000000000002e-29  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1712  glycine cleavage system T protein  29.51 
 
 
351 aa  131  2.0000000000000002e-29  Meiothermus ruber DSM 1279  Bacteria  normal  0.304402  normal 
 
 
-
 
NC_007604  Synpcc7942_2308  glycine cleavage system aminomethyltransferase T  27.73 
 
 
372 aa  130  3e-29  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.512156 
 
 
-
 
NC_013501  Rmar_1804  glycine cleavage system T protein  27.05 
 
 
375 aa  130  5.0000000000000004e-29  Rhodothermus marinus DSM 4252  Bacteria  normal  0.280258  n/a   
 
 
-
 
NC_013744  Htur_4141  glycine cleavage system T protein  28.45 
 
 
366 aa  129  7.000000000000001e-29  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_007514  Cag_1656  glycine cleavage system aminomethyltransferase T  27.97 
 
 
366 aa  129  7.000000000000001e-29  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.200164  n/a   
 
 
-
 
NC_009953  Sare_3548  glycine cleavage system aminomethyltransferase T  30.05 
 
 
374 aa  129  1.0000000000000001e-28  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.033061 
 
 
-
 
NC_013223  Dret_1559  glycine cleavage system T protein  28.73 
 
 
359 aa  129  1.0000000000000001e-28  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.338769 
 
 
-
 
NC_002977  MCA0350  glycine cleavage system aminomethyltransferase T  29.97 
 
 
360 aa  128  2.0000000000000002e-28  Methylococcus capsulatus str. Bath  Bacteria  normal  0.536076  n/a   
 
 
-
 
NC_011662  Tmz1t_3205  glycine cleavage system aminomethyltransferase T  28.31 
 
 
363 aa  128  2.0000000000000002e-28  Thauera sp. MZ1T  Bacteria  hitchhiker  0.0000683742  n/a   
 
 
-
 
NC_008312  Tery_2041  glycine cleavage system aminomethyltransferase T  29.32 
 
 
381 aa  128  2.0000000000000002e-28  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.044839 
 
 
-
 
NC_008346  Swol_1983  aminomethyltransferase  28.95 
 
 
366 aa  127  5e-28  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00232491  n/a   
 
 
-
 
NC_007512  Plut_0396  glycine cleavage system aminomethyltransferase T  27.4 
 
 
365 aa  126  6e-28  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_1885  glycine cleavage system aminomethyltransferase T  24.8 
 
 
363 aa  126  7e-28  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0094  glycine cleavage system T protein  31.6 
 
 
401 aa  126  7e-28  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2360  glycine cleavage system aminomethyltransferase T  28.81 
 
 
365 aa  126  7e-28  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0807615  n/a   
 
 
-
 
NC_014230  CA2559_11173  aminomethyltransferase  30.89 
 
 
360 aa  125  8.000000000000001e-28  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_006368  lpp0132  glycine cleavage system aminomethyltransferase T  29.4 
 
 
360 aa  126  8.000000000000001e-28  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_1945  aminomethyltransferase  28.06 
 
 
366 aa  126  8.000000000000001e-28  Moorella thermoacetica ATCC 39073  Bacteria  normal  hitchhiker  0.000000285507 
 
 
-
 
NC_009441  Fjoh_4451  glycine cleavage system aminomethyltransferase T  25.61 
 
 
369 aa  125  9e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl0117  glycine cleavage system aminomethyltransferase T  29.2 
 
 
360 aa  125  1e-27  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1756  glycine cleavage system aminomethyltransferase T  31.23 
 
 
362 aa  125  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.971274  normal  0.141351 
 
 
-
 
NC_009972  Haur_2868  glycine cleavage system T protein  29.49 
 
 
361 aa  125  1e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1102  glycine cleavage system aminomethyltransferase T  25.07 
 
 
363 aa  124  2e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  0.547647  n/a   
 
 
-
 
NC_009901  Spea_3303  glycine cleavage system aminomethyltransferase T  27.96 
 
 
364 aa  124  2e-27  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.00589278  n/a   
 
 
-
 
NC_007413  Ava_2760  glycine cleavage system aminomethyltransferase T  28.92 
 
 
376 aa  124  3e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.792697 
 
 
-
 
NC_013757  Gobs_3357  glycine cleavage system T protein  31.06 
 
 
372 aa  124  3e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.380294  n/a   
 
 
-
 
NC_009664  Krad_4046  glycine cleavage system T protein  29.76 
 
 
391 aa  124  3e-27  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.00578846  normal  0.203925 
 
 
-
 
NC_013441  Gbro_3071  glycine cleavage system T protein  29.67 
 
 
372 aa  123  6e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  0.483432  n/a   
 
 
-
 
NC_008009  Acid345_1269  glycine cleavage T protein (aminomethyl transferase)  27.62 
 
 
400 aa  122  9e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_0136  glycine cleavage system aminomethyltransferase T  27 
 
 
368 aa  122  9.999999999999999e-27  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0155  glycine cleavage system aminomethyltransferase T  27.72 
 
 
368 aa  122  9.999999999999999e-27  Xylella fastidiosa M12  Bacteria  normal  0.843588  n/a   
 
 
-
 
NC_008148  Rxyl_0470  aminomethyltransferase  27.2 
 
 
440 aa  122  9.999999999999999e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  decreased coverage  0.0000173433  n/a   
 
 
-
 
NC_008148  Rxyl_0767  glycine cleavage system T protein  27.2 
 
 
442 aa  122  9.999999999999999e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3845  glycine cleavage system T protein  28.22 
 
 
369 aa  122  9.999999999999999e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3997  glycine cleavage system aminomethyltransferase T  27.82 
 
 
372 aa  121  1.9999999999999998e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3061  glycine cleavage system aminomethyltransferase T  27.82 
 
 
372 aa  121  1.9999999999999998e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1542  glycine cleavage system aminomethyltransferase T  27.82 
 
 
372 aa  121  1.9999999999999998e-26  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2562  glycine cleavage system aminomethyltransferase T  29.44 
 
 
360 aa  121  1.9999999999999998e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3926  glycine cleavage system aminomethyltransferase T  27.82 
 
 
372 aa  121  1.9999999999999998e-26  Burkholderia pseudomallei 668  Bacteria  normal  0.108105  n/a   
 
 
-
 
NC_009831  Ssed_3675  glycine cleavage system aminomethyltransferase T  27.96 
 
 
364 aa  121  1.9999999999999998e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
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