More than 300 homologs were found in PanDaTox collection
for query gene Pmen_3456 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_3456  glycine cleavage T protein (aminomethyl transferase)  100 
 
 
376 aa  778    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5971  glycine cleavage T protein (aminomethyl transferase)  81.12 
 
 
376 aa  647    Burkholderia phymatum STM815  Bacteria  normal  normal  0.132187 
 
 
-
 
NC_010524  Lcho_0173  glycine cleavage T protein (aminomethyl transferase)  73.26 
 
 
376 aa  582  1.0000000000000001e-165  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009636  Smed_3311  glycine cleavage T protein (aminomethyl transferase)  69.5 
 
 
377 aa  548  1e-155  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5644  glycine cleavage T protein (aminomethyl transferase)  68.97 
 
 
377 aa  546  1e-154  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.457364  normal 
 
 
-
 
NC_012858  Rleg_6580  glycine cleavage T protein (aminomethyl transferase)  68.17 
 
 
377 aa  542  1e-153  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.852509  normal  0.0314164 
 
 
-
 
NC_009720  Xaut_0923  glycine cleavage T protein (aminomethyl transferase)  44.59 
 
 
379 aa  299  7e-80  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3605  glycine cleavage T protein (aminomethyl transferase)  41.53 
 
 
378 aa  277  2e-73  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_3187  glycine cleavage T protein (aminomethyl transferase)  41.55 
 
 
376 aa  266  2.9999999999999995e-70  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.149022 
 
 
-
 
NC_007947  Mfla_0439  aminomethyltransferase  40.22 
 
 
372 aa  262  6e-69  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.525568 
 
 
-
 
NC_010625  Bphy_5961  glycine cleavage T protein (aminomethyl transferase)  37.8 
 
 
370 aa  245  9e-64  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0205836 
 
 
-
 
NC_011666  Msil_3603  glycine cleavage T protein (aminomethyl transferase)  35.68 
 
 
761 aa  191  2.9999999999999997e-47  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010524  Lcho_0155  glycine cleavage T protein (aminomethyl transferase)  33.69 
 
 
790 aa  179  1e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_3460  glycine cleavage T protein (aminomethyl transferase)  34.54 
 
 
781 aa  175  9.999999999999999e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1202  glycine cleavage T protein (aminomethyl transferase)  33.08 
 
 
752 aa  173  3.9999999999999995e-42  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3184  glycine cleavage T protein (aminomethyl transferase)  32.47 
 
 
772 aa  169  9e-41  Xanthobacter autotrophicus Py2  Bacteria  normal  0.932347  normal  0.101013 
 
 
-
 
NC_012858  Rleg_6592  glycine cleavage T protein (aminomethyl transferase)  33.15 
 
 
789 aa  167  4e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.00642843 
 
 
-
 
NC_009338  Mflv_5134  aminomethyltransferase  33.42 
 
 
757 aa  164  3e-39  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5656  glycine cleavage T protein (aminomethyl transferase)  33.81 
 
 
789 aa  164  3e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.240642  normal 
 
 
-
 
NC_009636  Smed_3316  glycine cleavage T protein (aminomethyl transferase)  32.22 
 
 
789 aa  160  3e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2522  glycine cleavage system aminomethyltransferase T  33.15 
 
 
360 aa  158  1e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.167801 
 
 
-
 
NC_014210  Ndas_0426  glycine cleavage system T protein  32.48 
 
 
372 aa  152  1e-35  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.473658  normal 
 
 
-
 
NC_009523  RoseRS_1526  glycine cleavage system T protein  30.95 
 
 
371 aa  152  1e-35  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.293085 
 
 
-
 
NC_007760  Adeh_1245  glycine cleavage system aminomethyltransferase T  31.59 
 
 
360 aa  150  4e-35  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3299  glycine cleavage system T protein  28.91 
 
 
389 aa  147  3e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  0.212433  normal  0.550694 
 
 
-
 
NC_013521  Sked_00490  aminomethyltransferase  28.94 
 
 
381 aa  146  4.0000000000000006e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.155954 
 
 
-
 
NC_013744  Htur_4141  glycine cleavage system T protein  31.91 
 
 
366 aa  146  5e-34  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_009767  Rcas_2285  glycine cleavage system T protein  31.2 
 
 
370 aa  146  5e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00010894 
 
 
-
 
NC_009486  Tpet_0713  glycine cleavage system aminomethyltransferase T  30.09 
 
 
364 aa  146  7.0000000000000006e-34  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1756  glycine cleavage system aminomethyltransferase T  30.65 
 
 
362 aa  145  1e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.971274  normal  0.141351 
 
 
-
 
NC_010483  TRQ2_0737  glycine cleavage system aminomethyltransferase T  28.91 
 
 
364 aa  144  3e-33  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0961  glycine cleavage system T protein  30.75 
 
 
364 aa  143  4e-33  Thermobispora bispora DSM 43833  Bacteria  normal  0.132468  normal  0.780252 
 
 
-
 
NC_014151  Cfla_0094  glycine cleavage system T protein  30.53 
 
 
401 aa  143  4e-33  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2714  glycine cleavage system aminomethyltransferase T  31.34 
 
 
360 aa  143  5e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2620  glycine cleavage system aminomethyltransferase T  31.34 
 
 
360 aa  142  7e-33  Anaeromyxobacter sp. K  Bacteria  normal  0.398044  n/a   
 
 
-
 
NC_014148  Plim_2455  glycine cleavage system T protein  30.3 
 
 
363 aa  142  9.999999999999999e-33  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3184  aminomethyltransferase  33.07 
 
 
372 aa  142  9.999999999999999e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  hitchhiker  0.000207434  n/a   
 
 
-
 
NC_013411  GYMC61_0214  glycine cleavage system aminomethyltransferase T  32.27 
 
 
364 aa  142  9.999999999999999e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_1496  glycine cleavage system T protein  28.53 
 
 
371 aa  141  1.9999999999999998e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013159  Svir_13330  glycine cleavage system aminomethyltransferase T  30.32 
 
 
370 aa  140  3e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1538  glycine cleavage system T protein  28.37 
 
 
360 aa  140  4.999999999999999e-32  Clostridium phytofermentans ISDg  Bacteria  normal  0.641003  n/a   
 
 
-
 
NC_012669  Bcav_1914  glycine cleavage system T protein  32.07 
 
 
381 aa  140  4.999999999999999e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.00180377 
 
 
-
 
NC_013501  Rmar_1804  glycine cleavage system T protein  29.35 
 
 
375 aa  140  4.999999999999999e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  0.280258  n/a   
 
 
-
 
NC_013530  Xcel_0045  glycine cleavage system T protein  30.31 
 
 
379 aa  140  4.999999999999999e-32  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0350  glycine cleavage system aminomethyltransferase T  32.51 
 
 
360 aa  139  8.999999999999999e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  0.536076  n/a   
 
 
-
 
NC_013946  Mrub_1712  glycine cleavage system T protein  31.44 
 
 
351 aa  137  2e-31  Meiothermus ruber DSM 1279  Bacteria  normal  0.304402  normal 
 
 
-
 
NC_011899  Hore_23440  glycine cleavage system T protein  29.97 
 
 
357 aa  137  3.0000000000000003e-31  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000137386  n/a   
 
 
-
 
NC_006274  BCZK3981  glycine cleavage system aminomethyltransferase T  28.53 
 
 
366 aa  137  4e-31  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4305  glycine cleavage system aminomethyltransferase T  28.53 
 
 
366 aa  136  7.000000000000001e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4358  glycine cleavage system aminomethyltransferase T  28.53 
 
 
366 aa  136  7.000000000000001e-31  Bacillus cereus AH187  Bacteria  normal  0.51819  n/a   
 
 
-
 
NC_012793  GWCH70_2361  glycine cleavage system aminomethyltransferase T  29.7 
 
 
364 aa  135  9e-31  Geobacillus sp. WCH70  Bacteria  normal  0.365627  n/a   
 
 
-
 
NC_009674  Bcer98_2915  glycine cleavage system aminomethyltransferase T  28.53 
 
 
366 aa  135  9.999999999999999e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.75153  n/a   
 
 
-
 
NC_012803  Mlut_02950  aminomethyltransferase  30.89 
 
 
388 aa  135  9.999999999999999e-31  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4082  glycine cleavage system aminomethyltransferase T  28.53 
 
 
366 aa  135  1.9999999999999998e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1628  glycine cleavage system aminomethyltransferase T  27.58 
 
 
363 aa  134  1.9999999999999998e-30  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1595  glycine cleavage system aminomethyltransferase T  27.58 
 
 
363 aa  134  1.9999999999999998e-30  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.0825414  n/a   
 
 
-
 
NC_008009  Acid345_2461  glycine cleavage system aminomethyltransferase T  27.78 
 
 
380 aa  134  3e-30  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4039  glycine cleavage system T protein  29.95 
 
 
365 aa  134  3.9999999999999996e-30  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000142158  n/a   
 
 
-
 
NC_011060  Ppha_2360  glycine cleavage system aminomethyltransferase T  30.62 
 
 
365 aa  133  5e-30  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0807615  n/a   
 
 
-
 
NC_011138  MADE_00861  glycine cleavage system aminomethyltransferase T  30.73 
 
 
359 aa  133  6e-30  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2308  glycine cleavage system aminomethyltransferase T  31 
 
 
372 aa  132  7.999999999999999e-30  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.512156 
 
 
-
 
NC_008541  Arth_0765  glycine cleavage system aminomethyltransferase T  30.49 
 
 
385 aa  132  9e-30  Arthrobacter sp. FB24  Bacteria  normal  0.858386  n/a   
 
 
-
 
NC_002976  SERP1102  glycine cleavage system aminomethyltransferase T  26.85 
 
 
363 aa  132  1.0000000000000001e-29  Staphylococcus epidermidis RP62A  Bacteria  normal  0.547647  n/a   
 
 
-
 
NC_013205  Aaci_1800  glycine cleavage system T protein  27.75 
 
 
367 aa  132  1.0000000000000001e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_11173  aminomethyltransferase  28.3 
 
 
360 aa  132  1.0000000000000001e-29  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_009901  Spea_3303  glycine cleavage system aminomethyltransferase T  29.14 
 
 
364 aa  132  1.0000000000000001e-29  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.00589278  n/a   
 
 
-
 
NC_006369  lpl0117  glycine cleavage system aminomethyltransferase T  30.58 
 
 
360 aa  131  2.0000000000000002e-29  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_2721  glycine cleavage system aminomethyltransferase T  30.53 
 
 
364 aa  131  2.0000000000000002e-29  Shewanella amazonensis SB2B  Bacteria  normal  0.0309145  normal 
 
 
-
 
NC_006368  lpp0132  glycine cleavage system aminomethyltransferase T  30.58 
 
 
360 aa  130  3e-29  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011886  Achl_0882  glycine cleavage system aminomethyltransferase T  30.93 
 
 
382 aa  130  3e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008789  Hhal_1190  glycine cleavage system aminomethyltransferase T  32.46 
 
 
360 aa  130  3e-29  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2760  glycine cleavage system aminomethyltransferase T  29.89 
 
 
376 aa  130  4.0000000000000003e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.792697 
 
 
-
 
NC_007516  Syncc9605_2594  glycine cleavage system aminomethyltransferase T  30.06 
 
 
375 aa  130  4.0000000000000003e-29  Synechococcus sp. CC9605  Bacteria  normal  normal  0.26707 
 
 
-
 
NC_009718  Fnod_0976  glycine cleavage system aminomethyltransferase T  25.41 
 
 
430 aa  130  5.0000000000000004e-29  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0799  glycine cleavage system aminomethyltransferase T  31.44 
 
 
390 aa  130  5.0000000000000004e-29  Psychrobacter arcticus 273-4  Bacteria  normal  0.172783  normal 
 
 
-
 
NC_011886  Achl_0537  glycine cleavage system aminomethyltransferase T  31.22 
 
 
382 aa  130  5.0000000000000004e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010003  Pmob_1912  glycine cleavage system aminomethyltransferase T  26.36 
 
 
441 aa  130  5.0000000000000004e-29  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.0000389017  n/a   
 
 
-
 
NC_011772  BCG9842_B0901  glycine cleavage system aminomethyltransferase T  27.94 
 
 
366 aa  130  5.0000000000000004e-29  Bacillus cereus G9842  Bacteria  normal  0.281219  normal 
 
 
-
 
NC_007514  Cag_1656  glycine cleavage system aminomethyltransferase T  29.35 
 
 
366 aa  129  6e-29  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.200164  n/a   
 
 
-
 
NC_005945  BAS4131  glycine cleavage system aminomethyltransferase T  27.94 
 
 
366 aa  129  7.000000000000001e-29  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3971  glycine cleavage system aminomethyltransferase T  27.94 
 
 
366 aa  129  7.000000000000001e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4247  glycine cleavage system aminomethyltransferase T  27.94 
 
 
366 aa  129  7.000000000000001e-29  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_4449  glycine cleavage system aminomethyltransferase T  27.94 
 
 
366 aa  129  7.000000000000001e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.268637  n/a   
 
 
-
 
NC_013093  Amir_5660  glycine cleavage system aminomethyltransferase T  29.63 
 
 
365 aa  129  7.000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1847  aminomethyltransferase  29.76 
 
 
386 aa  129  7.000000000000001e-29  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.674665 
 
 
-
 
NC_004347  SO_0779  glycine cleavage system aminomethyltransferase T  30.03 
 
 
364 aa  129  1.0000000000000001e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_1720  glycine cleavage system T protein  28.69 
 
 
365 aa  128  1.0000000000000001e-28  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.845128 
 
 
-
 
NC_011901  Tgr7_2759  glycine cleavage system aminomethyltransferase T  31.18 
 
 
363 aa  129  1.0000000000000001e-28  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0246  glycine cleavage system aminomethyltransferase T  31.16 
 
 
360 aa  128  1.0000000000000001e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_1093  glycine cleavage system T protein  31.73 
 
 
375 aa  128  1.0000000000000001e-28  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.218414  normal 
 
 
-
 
NC_011761  AFE_0979  glycine cleavage system T protein  31.73 
 
 
372 aa  129  1.0000000000000001e-28  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.694312  n/a   
 
 
-
 
NC_009616  Tmel_1885  glycine cleavage system aminomethyltransferase T  26.98 
 
 
363 aa  129  1.0000000000000001e-28  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0143  glycine cleavage system aminomethyltransferase T  30.42 
 
 
372 aa  127  2.0000000000000002e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.228599  normal  0.397791 
 
 
-
 
NC_013161  Cyan8802_3874  glycine cleavage system aminomethyltransferase T  27.68 
 
 
369 aa  127  2.0000000000000002e-28  Cyanothece sp. PCC 8802  Bacteria  normal  0.644537  normal  0.546163 
 
 
-
 
NC_013922  Nmag_0716  glycine cleavage system T protein  29.65 
 
 
365 aa  128  2.0000000000000002e-28  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3211  glycine cleavage system aminomethyltransferase T  29.97 
 
 
364 aa  128  2.0000000000000002e-28  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00211141  n/a   
 
 
-
 
NC_008322  Shewmr7_0622  glycine cleavage system aminomethyltransferase T  30.03 
 
 
364 aa  127  2.0000000000000002e-28  Shewanella sp. MR-7  Bacteria  normal  0.0347517  normal 
 
 
-
 
NC_011726  PCC8801_3824  glycine cleavage system aminomethyltransferase T  27.68 
 
 
369 aa  127  2.0000000000000002e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007510  Bcep18194_A3325  glycine cleavage system aminomethyltransferase T  30.34 
 
 
372 aa  127  3e-28  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3501  glycine cleavage system aminomethyltransferase T  30.03 
 
 
364 aa  127  3e-28  Shewanella sp. ANA-3  Bacteria  normal  0.65276  normal 
 
 
-
 
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