| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0173 |
|---|
| Symbol | |
|---|
| ID | 6160754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 179958 |
|---|
| End bp | 181088 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641662917 |
|---|
| Product | glycine cleavage T protein (aminomethyl transferase) |
|---|
| Protein accession | YP_001789213 |
|---|
| Protein GI | 171056864 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCTT GGCGCATCTC GGCCCTGGCC GATCGACACC GCGCGCTGGG CTCGACCCTG
GCCGACTGGA ACGGCATGGG CACGGCCTGG ACCTACAGCT CCGACCTGGC CGACGAGCAC
GAAGCCATCC GCACCCATGC CGGCCTGATG GACGTGTCGG GCCTGAAGAA GGTGCACGTG
ATCGGCCCGC ACGCCGAGGC CCTGATCAAC CAGGCGGTGA CCCGCAACGT CAGCAAGCTC
TACCCGGGCA AGTCGGTCTA CGCCTGCATG CTCAACGAGG CCGGCAAGTT CATCGACGAC
TGCGTCATCT ACCGCAACGG TCCCAACGCC TTCATGGTGG TGCACGGCGC CGGCCAGGGC
CACGAGATCC TGACGCGCGG CGCGGTCGGC CGCAACGTTG CGGTGCTGTT CGACGACGAC
CTGCATGACC TGTCGCTGCA GGGGCCGCTC GCGGTCGAGT ACCTGAGCCG GCATGTGCCG
GGCATCCGCC AGCTGCCGTA TTTCCATCAC CTGCAGACGA CGCTGTTCGG CCGCCCGGTG
ATGATCTCGC GCACCGGCTA CACCGGCGAA CGCGGCTACG AGCTGTTCTG CAAGGCGGCC
GACGCGCCGA CGATCTGGGA CACCATCGTC GCCGAAGGCA AGGCGATGGG CATCGTGCCC
TGCGCGTTCA CCGCGCTCGA CTGGCTGCGG GTCGAGAGCT GCCTGCTGTT CTACCCCTAC
GACAACTCCG ACATGTACCC GATGGACGGC GAGCCCATCG GCGACACGCT GTGGGAGCTG
GGGCTGGACT TCACGGTGTC ACCGGGCAAG ACCGAGTTCC GCGGCGCGGC CGAGCACTTC
CGCCTGCAGG GGCGTGAGCG CTTCAAGATC TTCGGCATCG AACTCGACAG CACCGAGGCG
GCGCAGGCCG GCGATGCCCT CTACGACGGC GACACGAAGG TCGGCTTCGT CACCTGCGGC
ATGTATTCGC GCCTGAGCGG GCGCTCGATG GCGATCGCGC GCATGGACAC GGCCTACGCC
GTACCGGGCC GCAAGCTGGC CTTGCGTGGC GCCGCGCTGA ACTGCGCCGC CAGCACCCAC
AGCCTGCCGT TCGACGACCC GCAGAAGACC AAACGCATGG CCAAGGATTG A
|
|---|
| Protein sequence | MTSWRISALA DRHRALGSTL ADWNGMGTAW TYSSDLADEH EAIRTHAGLM DVSGLKKVHV
IGPHAEALIN QAVTRNVSKL YPGKSVYACM LNEAGKFIDD CVIYRNGPNA FMVVHGAGQG
HEILTRGAVG RNVAVLFDDD LHDLSLQGPL AVEYLSRHVP GIRQLPYFHH LQTTLFGRPV
MISRTGYTGE RGYELFCKAA DAPTIWDTIV AEGKAMGIVP CAFTALDWLR VESCLLFYPY
DNSDMYPMDG EPIGDTLWEL GLDFTVSPGK TEFRGAAEHF RLQGRERFKI FGIELDSTEA
AQAGDALYDG DTKVGFVTCG MYSRLSGRSM AIARMDTAYA VPGRKLALRG AALNCAASTH
SLPFDDPQKT KRMAKD
|
|---|
| |