More than 300 homologs were found in PanDaTox collection
for query gene Smed_0293 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_0293  binding-protein-dependent transport systems inner membrane component  100 
 
 
360 aa  715    Sinorhizobium medicae WSM419  Bacteria  normal  0.394661  normal 
 
 
-
 
NC_011989  Avi_0786  ABC transporter membrane spanning protein  75.59 
 
 
343 aa  505  9.999999999999999e-143  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4344  binding-protein-dependent transport systems inner membrane component  73.81 
 
 
336 aa  500  1e-140  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.275951 
 
 
-
 
NC_008254  Meso_2856  binding-protein-dependent transport systems inner membrane component  70.78 
 
 
346 aa  464  1e-129  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0388  binding-protein-dependent transport systems inner membrane component  69.73 
 
 
337 aa  464  1e-129  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.684401  normal 
 
 
-
 
NC_007493  RSP_2872  ABC alpha-glucoside transporter, inner membrane subunit AglF  70.27 
 
 
330 aa  446  1.0000000000000001e-124  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.51146  n/a   
 
 
-
 
NC_009049  Rsph17029_1518  binding-protein-dependent transport systems inner membrane component  70.27 
 
 
330 aa  447  1.0000000000000001e-124  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.10648  normal  0.108237 
 
 
-
 
NC_009428  Rsph17025_1148  binding-protein-dependent transport systems inner membrane component  71.26 
 
 
331 aa  447  1.0000000000000001e-124  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.696982  normal 
 
 
-
 
NC_011369  Rleg2_0356  binding-protein-dependent transport systems inner membrane component  72.15 
 
 
337 aa  446  1.0000000000000001e-124  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.36183 
 
 
-
 
NC_008709  Ping_2911  ABC alpha-glucoside transporter inner membrane binding protein  72.32 
 
 
336 aa  434  1e-120  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.306248 
 
 
-
 
NC_008043  TM1040_3306  binding-protein-dependent transport systems inner membrane component  64.09 
 
 
335 aa  395  1e-109  Ruegeria sp. TM1040  Bacteria  normal  0.0498492  normal  0.505135 
 
 
-
 
NC_007802  Jann_1947  binding-protein-dependent transport systems inner membrane component  57.96 
 
 
325 aa  378  1e-104  Jannaschia sp. CCS1  Bacteria  normal  0.984077  normal 
 
 
-
 
NC_009952  Dshi_1651  inner membrane ABC transporter permease protein  59.52 
 
 
334 aa  367  1e-100  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0167176  hitchhiker  0.00000136024 
 
 
-
 
NC_009953  Sare_3968  binding-protein-dependent transport systems inner membrane component  52.36 
 
 
350 aa  271  1e-71  Salinispora arenicola CNS-205  Bacteria  normal  0.252536  normal  0.145093 
 
 
-
 
NC_013595  Sros_7165  ABC alpha-glucoside transporter inner membrane binding protein  50 
 
 
323 aa  267  2e-70  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0234886 
 
 
-
 
NC_011899  Hore_14540  binding-protein-dependent transport systems inner membrane component  48.9 
 
 
289 aa  263  4.999999999999999e-69  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000000851926  n/a   
 
 
-
 
NC_009380  Strop_3588  binding-protein-dependent transport systems inner membrane component  50.18 
 
 
358 aa  262  8e-69  Salinispora tropica CNB-440  Bacteria  normal  0.463035  normal 
 
 
-
 
NC_013947  Snas_4649  binding-protein-dependent transport systems inner membrane component  50.37 
 
 
325 aa  261  1e-68  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  decreased coverage  0.000235602 
 
 
-
 
NC_011831  Cagg_3717  binding-protein-dependent transport systems inner membrane component  45.59 
 
 
378 aa  258  2e-67  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.845135  hitchhiker  0.00000439381 
 
 
-
 
NC_013174  Jden_0268  binding-protein-dependent transport systems inner membrane component  47.35 
 
 
334 aa  251  1e-65  Jonesia denitrificans DSM 20603  Bacteria  normal  0.142528  normal  0.163523 
 
 
-
 
NC_011899  Hore_13190  binding-protein-dependent transport systems inner membrane component  46.95 
 
 
289 aa  251  1e-65  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2338  ABC-type glucosylglycerol transport system permease protein  51.15 
 
 
328 aa  251  2e-65  Thermobifida fusca YX  Bacteria  normal  0.379248  n/a   
 
 
-
 
NC_013131  Caci_5759  binding-protein-dependent transport systems inner membrane component  45.49 
 
 
335 aa  243  3.9999999999999997e-63  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.281814  normal  0.0722986 
 
 
-
 
NC_013172  Bfae_26140  permease component of ABC-type sugar transporter  43.05 
 
 
388 aa  233  3e-60  Brachybacterium faecium DSM 4810  Bacteria  normal  0.33736  n/a   
 
 
-
 
NC_013530  Xcel_3236  binding-protein-dependent transport systems inner membrane component  46.89 
 
 
329 aa  230  3e-59  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_5151  binding-protein-dependent transport systems inner membrane component  42.96 
 
 
347 aa  228  1e-58  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3915  binding-protein-dependent transport systems inner membrane component  41.9 
 
 
320 aa  225  8e-58  Nocardioides sp. JS614  Bacteria  normal  0.604651  n/a   
 
 
-
 
NC_009972  Haur_1179  binding-protein-dependent transport systems inner membrane component  42.81 
 
 
367 aa  225  8e-58  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3181  binding-protein-dependent transport systems inner membrane component  43.21 
 
 
343 aa  219  3.9999999999999997e-56  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.145583 
 
 
-
 
NC_013521  Sked_01760  carbohydrate ABC transporter membrane protein  45.42 
 
 
329 aa  218  2e-55  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.471223  normal 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
290 aa  131  2.0000000000000002e-29  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_009718  Fnod_0627  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
294 aa  129  5.0000000000000004e-29  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.0000000558297  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
319 aa  127  3e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
311 aa  125  1e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007948  Bpro_3816  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
327 aa  123  6e-27  Polaromonas sp. JS666  Bacteria  normal  0.744275  normal 
 
 
-
 
NC_011988  Avi_5738  ABC transporter membrane spanning protein (sugar)  32.42 
 
 
302 aa  120  3.9999999999999996e-26  Agrobacterium vitis S4  Bacteria  normal  0.0678785  n/a   
 
 
-
 
NC_008709  Ping_2010  ABC transporter substrate binding inner membrane protein  30.77 
 
 
318 aa  120  3.9999999999999996e-26  Psychromonas ingrahamii 37  Bacteria  normal  0.360583  normal 
 
 
-
 
NC_012669  Bcav_0941  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
313 aa  119  9.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.737632 
 
 
-
 
NC_009654  Mmwyl1_2009  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
291 aa  118  1.9999999999999998e-25  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6903  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
324 aa  117  3e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0156181  normal  0.0141251 
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  31.29 
 
 
328 aa  116  5e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
298 aa  116  5e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  30.32 
 
 
307 aa  116  6e-25  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
307 aa  116  6e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
299 aa  116  6e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_010320  Teth514_0754  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
324 aa  115  7.999999999999999e-25  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000204062  n/a   
 
 
-
 
NC_009616  Tmel_0819  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
306 aa  115  1.0000000000000001e-24  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3206  binding-protein-dependent transport systems inner membrane component  29.28 
 
 
313 aa  115  1.0000000000000001e-24  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.409377 
 
 
-
 
NC_008699  Noca_0060  binding-protein-dependent transport systems inner membrane component  34.94 
 
 
289 aa  115  2.0000000000000002e-24  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1247  binding-protein-dependent transport systems inner membrane component  30 
 
 
308 aa  115  2.0000000000000002e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.732084 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  30.27 
 
 
313 aa  114  3e-24  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_014158  Tpau_1270  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
308 aa  114  3e-24  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6266  binding-protein-dependent transport systems inner membrane component  31.07 
 
 
320 aa  114  3e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4501  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
321 aa  114  4.0000000000000004e-24  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.824924  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  31.34 
 
 
427 aa  113  6e-24  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_009667  Oant_0639  binding-protein-dependent transport systems inner membrane component  31.99 
 
 
305 aa  112  7.000000000000001e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.371496  n/a   
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  32.35 
 
 
293 aa  112  9e-24  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  29.45 
 
 
299 aa  112  1.0000000000000001e-23  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  31.2 
 
 
322 aa  112  1.0000000000000001e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
299 aa  112  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_012850  Rleg_2651  binding-protein-dependent transport systems inner membrane component  30.14 
 
 
294 aa  112  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.493427  normal 
 
 
-
 
NC_013172  Bfae_05100  permease component of ABC-type sugar transporter  29.53 
 
 
316 aa  111  2.0000000000000002e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  29.03 
 
 
303 aa  111  2.0000000000000002e-23  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_012669  Bcav_2591  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
322 aa  111  2.0000000000000002e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.548364  normal 
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  28.66 
 
 
301 aa  111  2.0000000000000002e-23  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_011661  Dtur_1807  binding-protein-dependent transport systems inner membrane component  29.15 
 
 
295 aa  111  2.0000000000000002e-23  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1183  ABC transporter, permease protein  30.23 
 
 
307 aa  110  3e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  0.101432  n/a   
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
294 aa  110  3e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
294 aa  110  3e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_009078  BURPS1106A_A2817  putative carbohydrate ABC transporter, permease protein  30.23 
 
 
307 aa  110  3e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
299 aa  110  4.0000000000000004e-23  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_013172  Bfae_26620  carbohydrate ABC transporter membrane protein  29.19 
 
 
300 aa  109  6e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2715  binding-protein-dependent transport systems inner membrane component  33.74 
 
 
289 aa  109  9.000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009073  Pcal_1356  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
288 aa  109  9.000000000000001e-23  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.107464 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
293 aa  109  9.000000000000001e-23  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  27.61 
 
 
334 aa  108  1e-22  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_013172  Bfae_00850  carbohydrate ABC transporter membrane protein  30.9 
 
 
320 aa  108  1e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2326  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
294 aa  108  1e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.180469  normal 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  29.5 
 
 
308 aa  108  1e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  27.82 
 
 
310 aa  108  1e-22  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
312 aa  108  1e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  31.64 
 
 
295 aa  108  1e-22  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
314 aa  108  1e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_012669  Bcav_2718  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
330 aa  107  2e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.21265 
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  28.17 
 
 
310 aa  108  2e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_4929  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
311 aa  108  2e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.155715  normal 
 
 
-
 
NC_009380  Strop_2982  binding-protein-dependent transport systems inner membrane component  28.92 
 
 
313 aa  107  2e-22  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0523048 
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  28.1 
 
 
306 aa  108  2e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  27.46 
 
 
310 aa  107  3e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  27.46 
 
 
310 aa  107  3e-22  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  27.46 
 
 
310 aa  107  3e-22  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
316 aa  107  4e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  30.7 
 
 
314 aa  107  4e-22  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  30.7 
 
 
314 aa  107  4e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  30.61 
 
 
306 aa  107  4e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4933  binding-protein-dependent transport systems inner membrane component  28.66 
 
 
314 aa  107  4e-22  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.103484 
 
 
-
 
NC_011370  Rleg2_6091  binding-protein-dependent transport systems inner membrane component  29 
 
 
292 aa  107  4e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5488  binding-protein-dependent transport systems inner membrane component  28.66 
 
 
319 aa  107  4e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  0.80176  hitchhiker  0.000205378 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  30.19 
 
 
320 aa  107  4e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  30.07 
 
 
300 aa  106  5e-22  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
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