Gene Haur_1179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_1179 
Symbol 
ID5733072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand- 
Start bp1352611 
End bp1353714 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content49% 
IMG OID641278319 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001543955 
Protein GI159897708 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATCAC AACCACAAAC TAGCACAAAC ACTGAGCCAC GCTCACGTAA CAACGTCGGG 
CTGGCCCAGA TGCTGCTTGT CCCTCTCGCG TTATTAATCT CAATCTTGGT CGGGCGTTGG 
AGCCTTGGCG TTATGAAAGA TGCCGAAGCG CCACGGTTGT TGGTGGTTGG GGTGGCCTTG 
CTCGTCGGGG TCTTTGGGAT CTGGATTGCC TACTGGCTCT GTAACGAGTT GCTCAATCTG 
ATTCCTTCTG AGACGCTGCG CGAGAAGATT CGCCCAATAA TTTTTGTTGG CCCAGCCTTG 
GCCTTGCTGA TTATCTACTT GGTTTATCCA ACCGTGATGA CGGCCTACTA TAGTGTGCTC 
GACAAAAATA GCGAGGCCTT TGTTGGCCTT GATAACTACA CATTTGCCTT CAAAAATCGC 
ACCATCCAAA TCGCACTGCG CAATAATCTC TACTGGATTG TTGGCGTAAC CACATTTAGC 
GTGGTTGGTG GCTTGATTAT GGCGGTGCTG TTCGATAAAG TGCGCTATGA ATCAGTTGCC 
AAATCGATGA TCTTCTTGCC AATGATTATT TCGTTCGTTG GCGCAGGTGT GATTTGGCGC 
TTTATGTATG CCAGTAACCC GCCCGGTGTG GGCTTATTGA ATGCTTTTAT CGGCAATTTC 
GACTATAAAC CAGTTGCATG GCTGATCAAT AAGAGCGTTA ATAATATTTC GTTGATCGTG 
ATTATGATTT GGCTACAAAC TGGCTTTTGT CTGGTGATTC TCTCAGCAGC ACTCAAGGCG 
ATTCCTGCCG ATATCATCGA TGCAGCCCGG GTAGACGGCG CAGGCGAACT CGACATCTTC 
TGGCGAATTA TCATTCCTTC GCTCAAAACC ACAATTTTGA CGGTGGTGAC GACGGTCGTG 
ATCGCGGTGT TGAAGGTATT CGACATTGTG TTTGTGATGA CCAACGGCAA CTACGAAACC 
GAAGTGATCG CCAACCGCAT GTTTACCGAG TTCTTCCGCA ACCAAAACTA TGGCCTAAGT 
AGTGCCTTAA CCATGATTTT GGTGATCGCC GTGCTGCCAG TGATGATTAT TAATGTGCGG 
AACGCCCGCC GTCAGCGAGG GTAA
 
Protein sequence
MSSQPQTSTN TEPRSRNNVG LAQMLLVPLA LLISILVGRW SLGVMKDAEA PRLLVVGVAL 
LVGVFGIWIA YWLCNELLNL IPSETLREKI RPIIFVGPAL ALLIIYLVYP TVMTAYYSVL 
DKNSEAFVGL DNYTFAFKNR TIQIALRNNL YWIVGVTTFS VVGGLIMAVL FDKVRYESVA 
KSMIFLPMII SFVGAGVIWR FMYASNPPGV GLLNAFIGNF DYKPVAWLIN KSVNNISLIV 
IMIWLQTGFC LVILSAALKA IPADIIDAAR VDGAGELDIF WRIIIPSLKT TILTVVTTVV 
IAVLKVFDIV FVMTNGNYET EVIANRMFTE FFRNQNYGLS SALTMILVIA VLPVMIINVR 
NARRQRG