More than 300 homologs were found in PanDaTox collection
for query gene RSP_2872 on replicon NC_007493
Organism: Rhodobacter sphaeroides 2.4.1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007493  RSP_2872  ABC alpha-glucoside transporter, inner membrane subunit AglF  100 
 
 
330 aa  650    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.51146  n/a   
 
 
-
 
NC_009049  Rsph17029_1518  binding-protein-dependent transport systems inner membrane component  99.7 
 
 
330 aa  649    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.10648  normal  0.108237 
 
 
-
 
NC_009428  Rsph17025_1148  binding-protein-dependent transport systems inner membrane component  94.55 
 
 
331 aa  598  1e-170  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.696982  normal 
 
 
-
 
NC_008254  Meso_2856  binding-protein-dependent transport systems inner membrane component  71.43 
 
 
346 aa  477  1e-133  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0786  ABC transporter membrane spanning protein  68.67 
 
 
343 aa  451  1e-125  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4344  binding-protein-dependent transport systems inner membrane component  68.25 
 
 
336 aa  441  1e-123  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.275951 
 
 
-
 
NC_009636  Smed_0293  binding-protein-dependent transport systems inner membrane component  69.67 
 
 
360 aa  420  1e-116  Sinorhizobium medicae WSM419  Bacteria  normal  0.394661  normal 
 
 
-
 
NC_008709  Ping_2911  ABC alpha-glucoside transporter inner membrane binding protein  66.37 
 
 
336 aa  417  9.999999999999999e-116  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.306248 
 
 
-
 
NC_008043  TM1040_3306  binding-protein-dependent transport systems inner membrane component  67.79 
 
 
335 aa  408  1e-113  Ruegeria sp. TM1040  Bacteria  normal  0.0498492  normal  0.505135 
 
 
-
 
NC_012850  Rleg_0388  binding-protein-dependent transport systems inner membrane component  63.77 
 
 
337 aa  409  1e-113  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.684401  normal 
 
 
-
 
NC_009952  Dshi_1651  inner membrane ABC transporter permease protein  66.77 
 
 
334 aa  409  1e-113  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0167176  hitchhiker  0.00000136024 
 
 
-
 
NC_007802  Jann_1947  binding-protein-dependent transport systems inner membrane component  62.73 
 
 
325 aa  401  1e-111  Jannaschia sp. CCS1  Bacteria  normal  0.984077  normal 
 
 
-
 
NC_011369  Rleg2_0356  binding-protein-dependent transport systems inner membrane component  64.33 
 
 
337 aa  394  1e-108  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.36183 
 
 
-
 
NC_013595  Sros_7165  ABC alpha-glucoside transporter inner membrane binding protein  48.74 
 
 
323 aa  264  2e-69  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0234886 
 
 
-
 
NC_013131  Caci_5759  binding-protein-dependent transport systems inner membrane component  47.42 
 
 
335 aa  254  1.0000000000000001e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.281814  normal  0.0722986 
 
 
-
 
NC_013947  Snas_4649  binding-protein-dependent transport systems inner membrane component  49.45 
 
 
325 aa  253  2.0000000000000002e-66  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  decreased coverage  0.000235602 
 
 
-
 
NC_011831  Cagg_3717  binding-protein-dependent transport systems inner membrane component  46.88 
 
 
378 aa  251  9.000000000000001e-66  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.845135  hitchhiker  0.00000439381 
 
 
-
 
NC_008699  Noca_3915  binding-protein-dependent transport systems inner membrane component  42.55 
 
 
320 aa  246  3e-64  Nocardioides sp. JS614  Bacteria  normal  0.604651  n/a   
 
 
-
 
NC_009953  Sare_3968  binding-protein-dependent transport systems inner membrane component  48.18 
 
 
350 aa  245  8e-64  Salinispora arenicola CNS-205  Bacteria  normal  0.252536  normal  0.145093 
 
 
-
 
NC_011899  Hore_14540  binding-protein-dependent transport systems inner membrane component  47.1 
 
 
289 aa  243  3.9999999999999997e-63  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000000851926  n/a   
 
 
-
 
NC_009380  Strop_3588  binding-protein-dependent transport systems inner membrane component  46.35 
 
 
358 aa  241  2e-62  Salinispora tropica CNB-440  Bacteria  normal  0.463035  normal 
 
 
-
 
NC_011899  Hore_13190  binding-protein-dependent transport systems inner membrane component  44.96 
 
 
289 aa  237  2e-61  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26140  permease component of ABC-type sugar transporter  41.93 
 
 
388 aa  236  4e-61  Brachybacterium faecium DSM 4810  Bacteria  normal  0.33736  n/a   
 
 
-
 
NC_013174  Jden_0268  binding-protein-dependent transport systems inner membrane component  41.95 
 
 
334 aa  232  8.000000000000001e-60  Jonesia denitrificans DSM 20603  Bacteria  normal  0.142528  normal  0.163523 
 
 
-
 
NC_007333  Tfu_2338  ABC-type glucosylglycerol transport system permease protein  45.43 
 
 
328 aa  231  1e-59  Thermobifida fusca YX  Bacteria  normal  0.379248  n/a   
 
 
-
 
NC_013530  Xcel_3236  binding-protein-dependent transport systems inner membrane component  46.79 
 
 
329 aa  228  8e-59  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1179  binding-protein-dependent transport systems inner membrane component  45.2 
 
 
367 aa  223  3e-57  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_5151  binding-protein-dependent transport systems inner membrane component  40.8 
 
 
347 aa  223  4e-57  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_01760  carbohydrate ABC transporter membrane protein  44.64 
 
 
329 aa  214  1.9999999999999998e-54  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.471223  normal 
 
 
-
 
NC_014151  Cfla_3181  binding-protein-dependent transport systems inner membrane component  43 
 
 
343 aa  213  4.9999999999999996e-54  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.145583 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  36.01 
 
 
319 aa  138  1e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
307 aa  131  2.0000000000000002e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  33.11 
 
 
307 aa  131  2.0000000000000002e-29  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_009718  Fnod_0627  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
294 aa  127  3e-28  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.0000000558297  n/a   
 
 
-
 
NC_010003  Pmob_1923  binding-protein-dependent transport systems inner membrane component  30.23 
 
 
307 aa  125  9e-28  Petrotoga mobilis SJ95  Bacteria  normal  0.372981  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  29.51 
 
 
311 aa  125  1e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  31.34 
 
 
310 aa  124  2e-27  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  31.34 
 
 
310 aa  124  3e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  31.34 
 
 
310 aa  124  3e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
310 aa  124  3e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  31.34 
 
 
310 aa  124  3e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0941  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
313 aa  124  3e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.737632 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
290 aa  123  4e-27  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_008709  Ping_2010  ABC transporter substrate binding inner membrane protein  31.25 
 
 
318 aa  122  6e-27  Psychromonas ingrahamii 37  Bacteria  normal  0.360583  normal 
 
 
-
 
NC_005945  BAS0536  glycerol-3-phosphate ABC transporter permease  30.97 
 
 
310 aa  122  9.999999999999999e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0478  glycerol-3-phosphate ABC transporter, permease  31.34 
 
 
310 aa  122  9.999999999999999e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  30.97 
 
 
310 aa  122  9.999999999999999e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1134  binding-protein-dependent transport systems inner membrane component  30.95 
 
 
300 aa  120  3.9999999999999996e-26  Clostridium cellulolyticum H10  Bacteria  normal  0.454536  n/a   
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  31.07 
 
 
308 aa  119  7e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  29.86 
 
 
310 aa  119  9e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  29.86 
 
 
310 aa  119  9e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0754  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
324 aa  118  1.9999999999999998e-25  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000204062  n/a   
 
 
-
 
NC_014165  Tbis_0868  binding-protein-dependent transporter inner membrane component  43.26 
 
 
456 aa  118  1.9999999999999998e-25  Thermobispora bispora DSM 43833  Bacteria  normal  0.522192  normal  0.384822 
 
 
-
 
NC_012669  Bcav_2591  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
322 aa  117  3e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.548364  normal 
 
 
-
 
NC_013172  Bfae_26620  carbohydrate ABC transporter membrane protein  31.44 
 
 
300 aa  116  6e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_00850  carbohydrate ABC transporter membrane protein  32.67 
 
 
320 aa  116  6.9999999999999995e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  30.04 
 
 
306 aa  115  7.999999999999999e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0295  ABC-type sugar transport system periplasmic component-like protein  29.93 
 
 
300 aa  115  1.0000000000000001e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5738  ABC transporter membrane spanning protein (sugar)  31.21 
 
 
302 aa  115  1.0000000000000001e-24  Agrobacterium vitis S4  Bacteria  normal  0.0678785  n/a   
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
295 aa  115  1.0000000000000001e-24  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_013411  GYMC61_2715  binding-protein-dependent transport systems inner membrane component  32.4 
 
 
289 aa  114  2.0000000000000002e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011886  Achl_3074  binding-protein-dependent transport systems inner membrane component  29.81 
 
 
314 aa  113  4.0000000000000004e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  32.16 
 
 
305 aa  113  5e-24  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_2009  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
291 aa  112  6e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1656  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
318 aa  112  7.000000000000001e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.152531  normal  0.26367 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
313 aa  112  1.0000000000000001e-23  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
293 aa  111  2.0000000000000002e-23  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_007948  Bpro_3816  binding-protein-dependent transport systems inner membrane component  30.41 
 
 
327 aa  110  2.0000000000000002e-23  Polaromonas sp. JS666  Bacteria  normal  0.744275  normal 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
310 aa  111  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_008786  Veis_4548  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
297 aa  110  2.0000000000000002e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
293 aa  111  2.0000000000000002e-23  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4576  binding-protein-dependent transport systems inner membrane component  29.22 
 
 
314 aa  111  2.0000000000000002e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.00748515 
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
303 aa  110  3e-23  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  28.1 
 
 
312 aa  110  3e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  28.68 
 
 
293 aa  110  4.0000000000000004e-23  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
427 aa  110  4.0000000000000004e-23  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
309 aa  109  5e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_5440  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
329 aa  110  5e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.811614  normal 
 
 
-
 
NC_008686  Pden_1089  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
298 aa  109  5e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0615  binding-protein-dependent transport systems inner membrane component  28.77 
 
 
296 aa  109  6e-23  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  28.19 
 
 
301 aa  109  8.000000000000001e-23  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
298 aa  108  9.000000000000001e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  32.51 
 
 
322 aa  108  1e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  28.98 
 
 
315 aa  108  1e-22  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2702  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
299 aa  108  1e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.573437  normal  0.482713 
 
 
-
 
NC_008699  Noca_0060  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
289 aa  108  1e-22  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0185  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
315 aa  108  1e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1807  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
295 aa  108  1e-22  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_27710  permease component of ABC-type sugar transporter  31.2 
 
 
294 aa  108  2e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6266  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
320 aa  107  3e-22  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2651  binding-protein-dependent transport systems inner membrane component  28.22 
 
 
294 aa  107  3e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.493427  normal 
 
 
-
 
NC_010623  Bphy_4058  binding-protein-dependent transport systems inner membrane component  28.42 
 
 
309 aa  107  3e-22  Burkholderia phymatum STM815  Bacteria  normal  normal  0.801646 
 
 
-
 
NC_008541  Arth_1946  binding-protein-dependent transport systems inner membrane component  29.78 
 
 
320 aa  106  4e-22  Arthrobacter sp. FB24  Bacteria  normal  0.305055  n/a   
 
 
-
 
NC_013172  Bfae_01490  carbohydrate ABC transporter membrane protein  30.41 
 
 
324 aa  106  5e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  0.659857  n/a   
 
 
-
 
NC_009380  Strop_3263  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
298 aa  106  5e-22  Salinispora tropica CNB-440  Bacteria  normal  normal  0.52678 
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  29.64 
 
 
294 aa  106  5e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1247  binding-protein-dependent transport systems inner membrane component  29.59 
 
 
308 aa  106  5e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.732084 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
316 aa  106  6e-22  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  27.12 
 
 
293 aa  106  6e-22  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  26.73 
 
 
334 aa  106  6e-22  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>