| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2982 |
|---|
| Symbol | |
|---|
| ID | 5059446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3410987 |
|---|
| End bp | 3411928 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640475233 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001159798 |
|---|
| Protein GI | 145595501 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0523048 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCATG GCGTCGCGCG TTTTGTCACC GGCTTTCTGG CCCTGCCGGT CGCGCTCTAC
CTCTTCTACG TGGTCTGGCC CTTCGTCCAG GCCGCTGGTT ACTCGTTGAC CGACTGGGGC
GGCTACTCCG ACCGGCAGCA GTTCGTCGGG CTGGACAACT ACGTCCGGCT GTTCTCCGAC
GAGCTGATCA GGAAGGCTTT CTGGCACAAC GTCTTCTTCC TGGTCACCCT GCCGCTGTTC
ACGATCGCGC TGGCCCTGTT CCTCGCGTTC CTGCTCAACG TGGGCGGTCG CGAGGACAGG
GCCGGCATCC GGGGTGTCCT CGGCTCCGGT CTTTACAAGA TTATTTTCTT TTTCCCGCAG
GTGCTCTCCC TGGTCGTCGT CGCCGTCATG TGGCAGCAGA TCTACCGGGC CGACGGGCAG
GGCCTGATCA ACGGTGTGTT GATGAAGGTC GGGCTGGTTG ACCCGGACAA CCCGATCGCG
TTCACCAACG ACCCGGAGCC CTTTCTCGGT GTCCCCGCGG TGCTCTGGTG GCTGCTGTTG
ATCGCGGTCT GGAGCGGCGC CGGGTTCTAC ATGGTGCTCT TCTCGGCGGC GATGCAGTCG
ATTCCGAAGG ACGTCTTCGA GGCGGCCATC CTCGACGGTG CCGGTCGGTT CCACACGTTC
TTCCGGATCA CGCTACCGCT GCTGCGGGAC ACCGTCTCGG TCGCCTGGAT CTATCTGGGC
TTCATCGCTC TGGACATGTA CGCCCTGGTC TTCGTGATGA CACCCAGCCA GGGTGGCCCG
AACCACGCCA GCGAGATCTT CGCGTCGGTG CTCAACTTCA CCGCCTTCCA GAAGGGCCAG
TTCGGCTACG CCTGCGCGAT GGGTGTGGCA TTGGCGATCT TCGCGCTTCT CCTGGCCGCG
GCGCAGCTGA AAATCACCCG CCGCGAGCGG ATTGAGTACT GA
|
|---|
| Protein sequence | MRHGVARFVT GFLALPVALY LFYVVWPFVQ AAGYSLTDWG GYSDRQQFVG LDNYVRLFSD
ELIRKAFWHN VFFLVTLPLF TIALALFLAF LLNVGGREDR AGIRGVLGSG LYKIIFFFPQ
VLSLVVVAVM WQQIYRADGQ GLINGVLMKV GLVDPDNPIA FTNDPEPFLG VPAVLWWLLL
IAVWSGAGFY MVLFSAAMQS IPKDVFEAAI LDGAGRFHTF FRITLPLLRD TVSVAWIYLG
FIALDMYALV FVMTPSQGGP NHASEIFASV LNFTAFQKGQ FGYACAMGVA LAIFALLLAA
AQLKITRRER IEY
|
|---|
| |