30 homologs were found in PanDaTox collection
for query gene Shew185_3350 on replicon NC_009665
Organism: Shewanella baltica OS185



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009665  Shew185_3350  XRE family transcriptional regulator  100 
 
 
115 aa  234  3e-61  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3247  XRE family transcriptional regulator  100 
 
 
115 aa  234  3e-61  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1872  XRE family transcriptional regulator  95.65 
 
 
115 aa  224  2e-58  Shewanella baltica OS185  Bacteria  normal  0.765913  n/a   
 
 
-
 
NC_009997  Sbal195_3380  XRE family transcriptional regulator  95.65 
 
 
115 aa  224  4e-58  Shewanella baltica OS195  Bacteria  normal  0.738813  hitchhiker  0.00256975 
 
 
-
 
NC_009997  Sbal195_3478  XRE family transcriptional regulator  93.91 
 
 
115 aa  221  3e-57  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.0022624 
 
 
-
 
NC_010506  Swoo_4574  XRE family transcriptional regulator  54.55 
 
 
103 aa  80.5  0.000000000000007  Shewanella woodyi ATCC 51908  Bacteria  normal  unclonable  0.0000000193925 
 
 
-
 
NC_007643  Rru_A1125  XRE family transcriptional regulator  36.71 
 
 
104 aa  59.3  0.00000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4570  XRE family transcriptional regulator  37.18 
 
 
99 aa  52.4  0.000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.27714 
 
 
-
 
NC_012858  Rleg_6814  transcriptional regulator, XRE family  35.29 
 
 
102 aa  49.3  0.00002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.745896  normal 
 
 
-
 
NC_007974  Rmet_4373  XRE family transcriptional regulator  44.07 
 
 
123 aa  48.1  0.00004  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00851296  normal  0.949544 
 
 
-
 
NC_007348  Reut_B3922  helix-hairpin-helix DNA-binding motif-containing protein  44.07 
 
 
118 aa  47.8  0.00006  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0549  transcriptional regulator, XRE family  30.86 
 
 
103 aa  47.4  0.00007  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_04053  Transcriptional Regulator, XRE family protein  30.86 
 
 
106 aa  47.4  0.00007  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4487  transcriptional regulator, XRE family  34.29 
 
 
177 aa  46.6  0.0001  Ralstonia pickettii 12J  Bacteria  normal  0.181354  normal  0.422127 
 
 
-
 
NC_003296  RS01906  hypothetical protein  31.11 
 
 
180 aa  46.6  0.0001  Ralstonia solanacearum GMI1000  Bacteria  normal  0.610922  normal  0.293874 
 
 
-
 
NC_012857  Rpic12D_4620  transcriptional regulator, XRE family  34.29 
 
 
177 aa  46.6  0.0001  Ralstonia pickettii 12D  Bacteria  normal  0.157225  normal  0.499919 
 
 
-
 
NC_010831  Cphamn1_0339  transcriptional regulator, XRE family  32.5 
 
 
115 aa  46.6  0.0001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.852602 
 
 
-
 
NC_009483  Gura_1476  XRE family transcriptional regulator  35.38 
 
 
91 aa  43.1  0.001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2265  helix-turn-helix domain-containing protein  30 
 
 
115 aa  42.7  0.002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2898  transcriptional regulator, XRE family  38.71 
 
 
83 aa  42.4  0.002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2079  XRE family transcriptional regulator  30.19 
 
 
186 aa  42  0.003  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0185194  normal 
 
 
-
 
NC_010803  Clim_0110  transcriptional regulator, XRE family  30 
 
 
115 aa  42  0.003  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1622  transcriptional regulator, XRE family  33.33 
 
 
100 aa  42  0.003  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2252  XRE family transcriptional regulator  33.33 
 
 
100 aa  42  0.003  Acidovorax sp. JS42  Bacteria  hitchhiker  0.00411497  normal  0.680338 
 
 
-
 
NC_006368  lpp0065  hypothetical protein  37.1 
 
 
79 aa  41.6  0.004  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_2034  XRE family transcriptional regulator  35.38 
 
 
83 aa  41.6  0.004  Enterobacter sp. 638  Bacteria  normal  normal  0.194194 
 
 
-
 
NC_009712  Mboo_1574  XRE family transcriptional regulator  44 
 
 
184 aa  41.2  0.005  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.844747  normal 
 
 
-
 
NC_007778  RPB_0688  XRE family transcriptional regulator  30 
 
 
110 aa  40.8  0.007  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1067  XRE family transcriptional regulator  31.88 
 
 
86 aa  40.4  0.008  Burkholderia phymatum STM815  Bacteria  normal  normal  0.753603 
 
 
-
 
NC_007336  Reut_C5997  helix-hairpin-helix DNA-binding motif-containing protein  26.47 
 
 
104 aa  40  0.01  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
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