24 homologs were found in PanDaTox collection
for query gene Swoo_4574 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010506  Swoo_4574  XRE family transcriptional regulator  100 
 
 		 103 aa  206  8e-53  Shewanella woodyi ATCC 51908  Bacteria  normal  1  unclonable  0.0000000193925 
 
 
-
 
NC_009665  Shew185_1872  XRE family transcriptional regulator  64.91 
 
 		 115 aa  80.9  0.000000000000006  Shewanella baltica OS185  Bacteria  normal  0.765913  n/a   
 
 
-
 
NC_009997  Sbal195_3478  XRE family transcriptional regulator  64.91 
 
 		 115 aa  80.9  0.000000000000006  Shewanella baltica OS195  Bacteria  normal  1  hitchhiker  0.0022624 
 
 
-
 
NC_009665  Shew185_3247  XRE family transcriptional regulator  54.55 
 
 		 115 aa  80.5  0.000000000000007  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_3350  XRE family transcriptional regulator  54.55 
 
 		 115 aa  80.5  0.000000000000007  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_3380  XRE family transcriptional regulator  64.91 
 
 		 115 aa  80.5  0.000000000000007  Shewanella baltica OS195  Bacteria  normal  0.738813  hitchhiker  0.00256975 
 
 
-
 
NC_003296  RS01906  hypothetical protein  37.88 
 
 		 180 aa  47.4  0.00007  Ralstonia solanacearum GMI1000  Bacteria  normal  0.610922  normal  0.293874 
 
 
-
 
NC_012857  Rpic12D_4620  transcriptional regulator, XRE family  37.88 
 
 		 177 aa  46.6  0.0001  Ralstonia pickettii 12D  Bacteria  normal  0.157225  normal  0.499919 
 
 
-
 
NC_010678  Rpic_4487  transcriptional regulator, XRE family  37.88 
 
 		 177 aa  46.6  0.0001  Ralstonia pickettii 12J  Bacteria  normal  0.181354  normal  0.422127 
 
 
-
 
NC_010814  Glov_2898  transcriptional regulator, XRE family  36.99 
 
 		 83 aa  45.4  0.0002  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_0478  XRE family transcriptional regulator  33.33 
 
 		 78 aa  44.7  0.0004  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_0376  XRE family transcriptional regulator  32.81 
 
 		 82 aa  44.7  0.0004  Shewanella sediminis HAW-EB3  Bacteria  normal  1  unclonable  0.0000000000453716 
 
 
-
 
NC_013421  Pecwa_4613  helix-turn-helix domain protein  28.57 
 
 		 89 aa  42.7  0.002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.590277  n/a   
 
 
-
 
NC_009997  Sbal195_0677  XRE family transcriptional regulator  34.55 
 
 		 78 aa  41.6  0.004  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_0649  XRE family transcriptional regulator  34.55 
 
 		 78 aa  41.6  0.004  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009436  Ent638_2034  XRE family transcriptional regulator  34.43 
 
 		 83 aa  41.6  0.004  Enterobacter sp. 638  Bacteria  normal  1  normal  0.194194 
 
 
-
 
NC_010506  Swoo_4570  XRE family transcriptional regulator  31.25 
 
 		 82 aa  40.8  0.006  Shewanella woodyi ATCC 51908  Bacteria  normal  1  unclonable  0.000000015798 
 
 
-
 
NC_012912  Dd1591_3701  transcriptional regulator, XRE family  29.35 
 
 		 101 aa  40.8  0.006  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_0669  transcriptional regulator, XRE family  32.73 
 
 		 78 aa  40.8  0.007  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_0557  XRE family transcriptional regulator  32.73 
 
 		 78 aa  40.4  0.008  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.948289 
 
 
-
 
NC_004347  SO_0705  Cro/CI family transcriptional regulator  32.73 
 
 		 97 aa  40.4  0.008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3100  transcriptional regulator, XRE family  36.21 
 
 		 97 aa  40  0.01  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000473627  n/a   
 
 
-
 
NC_013411  GYMC61_2176  transcriptional regulator, XRE family  36.21 
 
 		 97 aa  40  0.01  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_0549  transcriptional regulator, XRE family  33.85 
 
 		 103 aa  40  0.01  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
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