| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4620 |
|---|
| Symbol | |
|---|
| ID | 8022308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1273036 |
|---|
| End bp | 1273569 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644833392 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_002984532 |
|---|
| Protein GI | 241666173 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3620] Predicted transcriptional regulator with C-terminal CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.157225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.499919 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGC CTTTCAAGCA GTTACACAGT CTGCGCAAGT CGCGCAAGCT CAAACAGGAA
GATGTCGCCA AGATGGCCGG TATCTCTCGC GAAGCGTATT TGCGCGCGGA ATCCGGTCGT
GCCGATCCCC GCCTGTCGAC GCTGATGGCC GTGGCCGGCG CGCTGGGGCT GGAGGTCGTT
CTGGCGCCGC GAGAAGCCGT CGCCGAGATC GAGCGCGTGA TTGCCAATCA CCCGACGCAG
CCAACGCAAG CGGGCGGCGG GGCAGAAGCA GGCCACGAGC GCTCGGAGCA AGGTTCAATG
GGCGGCACGG GCGGTGGTCA TGGCCTGGCG GGCCAATACC GCGGGCCAGA GCGCCATCCG
CAGTCGGCCT ATCATCCGGG TGCCTCGCAT AGCCAAGCCG GCCAGCAAGG CGCACCGCAT
GCTGGCAGCA GTGCAGAAGA TCGCTCGCGC ATGACGTCTT CGGACCGCCC AGGCGCTGGC
GGCTCGTCGG GCGGCTCGGA TCGTCCGGGC GGTTCGGGTT CGCGCGAGTC GTAA
|
|---|
| Protein sequence | MEQPFKQLHS LRKSRKLKQE DVAKMAGISR EAYLRAESGR ADPRLSTLMA VAGALGLEVV
LAPREAVAEI ERVIANHPTQ PTQAGGGAEA GHERSEQGSM GGTGGGHGLA GQYRGPERHP
QSAYHPGASH SQAGQQGAPH AGSSAEDRSR MTSSDRPGAG GSSGGSDRPG GSGSRES
|
|---|
| |