35 homologs were found in PanDaTox collection
for query gene Reut_C5997 on replicon NC_007336
Organism: Ralstonia eutropha JMP134



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007336  Reut_C5997  helix-hairpin-helix DNA-binding motif-containing protein  100 
 
 
104 aa  210  3.9999999999999995e-54  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6167  helix-hairpin-helix DNA-binding motif-containing protein  77.91 
 
 
89 aa  134  5e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.689241  n/a   
 
 
-
 
NC_008391  Bamb_4541  XRE family transcriptional regulator  50.7 
 
 
108 aa  65.1  0.0000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0283  XRE family transcriptional regulator  44.71 
 
 
99 aa  64.7  0.0000000004  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5133  XRE family transcriptional regulator  47.89 
 
 
111 aa  62.4  0.000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.93216  normal  0.775541 
 
 
-
 
NC_010622  Bphy_1067  XRE family transcriptional regulator  45.16 
 
 
86 aa  57  0.00000009  Burkholderia phymatum STM815  Bacteria  normal  normal  0.753603 
 
 
-
 
NC_012792  Vapar_5937  transcriptional regulator, XRE family  43.04 
 
 
108 aa  53.1  0.000001  Variovorax paradoxus S110  Bacteria  normal  0.496478  n/a   
 
 
-
 
NC_007347  Reut_A1911  putative transcription regulator protein  39.71 
 
 
112 aa  47  0.0001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1094  hypothetical protein  37.18 
 
 
84 aa  45.8  0.0002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4570  XRE family transcriptional regulator  36.36 
 
 
82 aa  43.5  0.001  Shewanella woodyi ATCC 51908  Bacteria  normal  unclonable  0.000000015798 
 
 
-
 
NC_008345  Sfri_3656  transcriptional regulator, XRE family protein  36.84 
 
 
78 aa  43.1  0.001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3396  XRE family transcriptional regulator  33.33 
 
 
97 aa  42.4  0.002  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00158475 
 
 
-
 
NC_010814  Glov_0168  transcriptional regulator, XRE family  38.24 
 
 
86 aa  42.4  0.002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2260  transcriptional regulator, XRE family  39.68 
 
 
72 aa  41.6  0.003  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0705  Cro/CI family transcriptional regulator  36.21 
 
 
97 aa  41.6  0.003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008781  Pnap_1027  XRE family transcriptional regulator  50 
 
 
223 aa  42  0.003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.944907 
 
 
-
 
NC_008044  TM1040_2158  XRE family transcriptional regulator  38.18 
 
 
239 aa  42  0.003  Ruegeria sp. TM1040  Bacteria  normal  0.233392  normal  0.181964 
 
 
-
 
NC_007604  Synpcc7942_2038  transcriptional regulator  33.33 
 
 
230 aa  42  0.003  Synechococcus elongatus PCC 7942  Bacteria  normal  0.547476  normal 
 
 
-
 
NC_009665  Shew185_0649  XRE family transcriptional regulator  36.21 
 
 
78 aa  41.6  0.004  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0677  XRE family transcriptional regulator  36.21 
 
 
78 aa  41.6  0.004  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0188  XRE family transcriptional regulator  50 
 
 
229 aa  41.6  0.004  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.054457 
 
 
-
 
NC_008322  Shewmr7_0557  XRE family transcriptional regulator  36.21 
 
 
78 aa  41.6  0.004  Shewanella sp. MR-7  Bacteria  normal  normal  0.948289 
 
 
-
 
NC_006368  lpp1916  hypothetical protein  27.16 
 
 
93 aa  41.6  0.004  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0478  XRE family transcriptional regulator  34.92 
 
 
78 aa  41.2  0.005  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0669  transcriptional regulator, XRE family  36.21 
 
 
78 aa  41.2  0.005  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0376  XRE family transcriptional regulator  35.09 
 
 
82 aa  40.8  0.006  Shewanella sediminis HAW-EB3  Bacteria  normal  unclonable  0.0000000000453716 
 
 
-
 
NC_010511  M446_3867  XRE family transcriptional regulator  30.43 
 
 
201 aa  40.8  0.006  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5392  helix-turn-helix domain-containing protein  36.71 
 
 
183 aa  40.4  0.007  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.471231  normal  0.0187132 
 
 
-
 
NC_009997  Sbal195_3478  XRE family transcriptional regulator  26.47 
 
 
115 aa  40.4  0.009  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.0022624 
 
 
-
 
NC_009665  Shew185_1872  XRE family transcriptional regulator  26.47 
 
 
115 aa  40.4  0.009  Shewanella baltica OS185  Bacteria  normal  0.765913  n/a   
 
 
-
 
NC_009665  Shew185_3350  XRE family transcriptional regulator  26.47 
 
 
115 aa  40  0.01  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3247  XRE family transcriptional regulator  26.47 
 
 
115 aa  40  0.01  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1727  XRE family transcriptional regulator  31.43 
 
 
191 aa  40  0.01  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.170715  normal  0.149129 
 
 
-
 
NC_008542  Bcen2424_1712  XRE family transcriptional regulator  31.43 
 
 
191 aa  40  0.01  Burkholderia cenocepacia HI2424  Bacteria  normal  0.526366  n/a   
 
 
-
 
NC_008062  Bcen_6366  XRE family transcriptional regulator  31.43 
 
 
191 aa  40  0.01  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0311191  n/a   
 
 
-
 
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