More than 300 homologs were found in PanDaTox collection
for query gene RS02011 on replicon NC_003296
Organism: Ralstonia solanacearum GMI1000



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003296  RS02011  acyl-CoA dehydrogenase oxidoreductase protein  100 
 
 
399 aa  793    Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3948  acyl-CoA dehydrogenase domain protein  91.73 
 
 
391 aa  717    Ralstonia pickettii 12D  Bacteria  normal  normal  0.0664421 
 
 
-
 
NC_010678  Rpic_3835  acyl-CoA dehydrogenase domain protein  91.73 
 
 
391 aa  717    Ralstonia pickettii 12J  Bacteria  normal  normal  0.588687 
 
 
-
 
NC_008752  Aave_3176  acyl-CoA dehydrogenase domain-containing protein  83.59 
 
 
389 aa  634  1e-180  Acidovorax citrulli AAC00-1  Bacteria  normal  0.05744  normal  0.678758 
 
 
-
 
NC_010623  Bphy_4072  acyl-CoA dehydrogenase domain-containing protein  74.41 
 
 
401 aa  568  1e-161  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2115  acyl-CoA dehydrogenase domain-containing protein  73.7 
 
 
404 aa  567  1e-160  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.874922 
 
 
-
 
NC_010676  Bphyt_7164  acyl-CoA dehydrogenase domain protein  74.03 
 
 
402 aa  545  1e-154  Burkholderia phytofirmans PsJN  Bacteria  normal  0.647387  normal 
 
 
-
 
NC_007952  Bxe_B0278  putative acyl-CoA dehydrogenase  74.34 
 
 
402 aa  541  1e-153  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4469  acyl-CoA dehydrogenase domain-containing protein  71.65 
 
 
389 aa  541  1e-153  Delftia acidovorans SPH-1  Bacteria  normal  0.029664  normal  0.327843 
 
 
-
 
NC_007347  Reut_A2181  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  72.02 
 
 
389 aa  533  1e-150  Ralstonia eutropha JMP134  Bacteria  normal  0.594963  n/a   
 
 
-
 
NC_007973  Rmet_2199  acyl-CoA dehydrogenase-like protein  71.5 
 
 
388 aa  510  1e-143  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00319819  normal  0.0749115 
 
 
-
 
NC_008148  Rxyl_2278  acyl-CoA dehydrogenase-like protein  62.88 
 
 
390 aa  498  1e-140  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4017  acyl-CoA dehydrogenase domain-containing protein  69.11 
 
 
391 aa  496  1e-139  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7841  putative acyl-CoA dehydrogenase  66.84 
 
 
398 aa  477  1e-133  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0226224  normal  0.324634 
 
 
-
 
NC_007802  Jann_1327  acyl-CoA dehydrogenase-like  62.6 
 
 
383 aa  471  1.0000000000000001e-131  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0824  acyl-CoA dehydrogenase domain-containing protein  62.18 
 
 
393 aa  464  9.999999999999999e-131  Sphingomonas wittichii RW1  Bacteria  normal  0.294014  normal 
 
 
-
 
NC_011894  Mnod_1203  acyl-CoA dehydrogenase domain protein  63.92 
 
 
381 aa  449  1e-125  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2691  acyl-CoA dehydrogenase domain-containing protein  62.63 
 
 
391 aa  451  1e-125  Maricaulis maris MCS10  Bacteria  normal  0.602667  normal 
 
 
-
 
NC_013440  Hoch_4885  Butyryl-CoA dehydrogenase  64.89 
 
 
413 aa  446  1.0000000000000001e-124  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0885912 
 
 
-
 
NC_008044  TM1040_2239  acyl-CoA dehydrogenase-like  61.68 
 
 
384 aa  444  1e-123  Ruegeria sp. TM1040  Bacteria  normal  0.708615  normal 
 
 
-
 
NC_012791  Vapar_5041  acyl-CoA dehydrogenase domain protein  62.63 
 
 
397 aa  437  1e-121  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_5091  acyl-CoA dehydrogenase domain-containing protein  60.68 
 
 
378 aa  429  1e-119  Paracoccus denitrificans PD1222  Bacteria  normal  0.580305  normal 
 
 
-
 
NC_008786  Veis_0496  acyl-CoA dehydrogenase domain-containing protein  60.55 
 
 
411 aa  413  1e-114  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.249312  normal 
 
 
-
 
NC_008781  Pnap_3620  acyl-CoA dehydrogenase domain-containing protein  59.54 
 
 
393 aa  414  1e-114  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.404533 
 
 
-
 
NC_007948  Bpro_0590  acyl-CoA dehydrogenase-like  56.45 
 
 
414 aa  379  1e-104  Polaromonas sp. JS666  Bacteria  normal  0.882446  normal 
 
 
-
 
NC_013131  Caci_6321  acyl-CoA dehydrogenase domain protein  47.89 
 
 
383 aa  292  8e-78  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.249622  normal  0.451082 
 
 
-
 
NC_012880  Dd703_3095  acyl-CoA dehydrogenase domain protein  44.65 
 
 
397 aa  291  1e-77  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1049  acyl-CoA dehydrogenase domain-containing protein  46.07 
 
 
405 aa  278  1e-73  Salinispora arenicola CNS-205  Bacteria  normal  0.239765  normal  0.0805171 
 
 
-
 
NC_013131  Caci_5525  acyl-CoA dehydrogenase domain protein  45.68 
 
 
397 aa  267  2e-70  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3276  acyl-CoA dehydrogenase-like  47.03 
 
 
382 aa  253  3e-66  Frankia sp. CcI3  Bacteria  normal  normal  0.863338 
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  45.2 
 
 
379 aa  248  2e-64  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3450  acyl-CoA dehydrogenase domain protein  44.44 
 
 
380 aa  245  9.999999999999999e-64  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013757  Gobs_4353  acyl-CoA dehydrogenase domain protein  44.26 
 
 
385 aa  244  1.9999999999999999e-63  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4085  acyl-CoA dehydrogenase domain protein  46.6 
 
 
398 aa  239  5e-62  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4400  acyl-CoA dehydrogenase domain protein  41.47 
 
 
394 aa  239  8e-62  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3931  acyl-CoA dehydrogenase domain-containing protein  39.09 
 
 
400 aa  239  8e-62  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.543045 
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  41.85 
 
 
379 aa  238  1e-61  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  42.76 
 
 
379 aa  237  2e-61  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
NC_008261  CPF_2584  butyryl-CoA dehydrogenase  41.36 
 
 
379 aa  237  2e-61  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2286  butyryl-CoA dehydrogenase  41.36 
 
 
379 aa  237  2e-61  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2160  acyl-CoA dehydrogenase domain protein  47.92 
 
 
391 aa  237  3e-61  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.828679 
 
 
-
 
NC_008025  Dgeo_0736  acyl-CoA dehydrogenase-like protein  42.22 
 
 
379 aa  237  3e-61  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.763418 
 
 
-
 
NC_009656  PSPA7_3642  putative acyl-CoA dehydrogenase  41.49 
 
 
384 aa  236  4e-61  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3863  acyl-CoA dehydrogenase domain-containing protein  41.81 
 
 
376 aa  236  5.0000000000000005e-61  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4391  acyl-CoA dehydrogenase domain-containing protein  41.53 
 
 
386 aa  236  5.0000000000000005e-61  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  42.76 
 
 
379 aa  236  6e-61  Bacillus cereus B4264  Bacteria  unclonable  0.0000608426  n/a   
 
 
-
 
NC_011773  BCAH820_5434  acyl-CoA dehydrogenase  43.09 
 
 
379 aa  236  8e-61  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000286159 
 
 
-
 
NC_004311  BRA0220  acyl-CoA dehydrogenase  44.37 
 
 
384 aa  235  8e-61  Brucella suis 1330  Bacteria  normal  0.0793985  n/a   
 
 
-
 
NC_008463  PA14_43420  putative acyl-CoA dehydrogenase  40.48 
 
 
384 aa  235  8e-61  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0779209  normal 
 
 
-
 
NC_005945  BAS5190  acyl-CoA dehydrogenase  43.09 
 
 
379 aa  235  9e-61  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5586  acyl-CoA dehydrogenase  43.09 
 
 
379 aa  235  9e-61  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5472  acyl-CoA dehydrogenase  42.76 
 
 
379 aa  234  2.0000000000000002e-60  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5041  acyl-CoA dehydrogenase  42.76 
 
 
379 aa  234  2.0000000000000002e-60  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1356  acyl-CoA dehydrogenase domain protein  42.59 
 
 
379 aa  234  2.0000000000000002e-60  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.00000000100384  n/a   
 
 
-
 
NC_011658  BCAH187_A5519  acyl-CoA dehydrogenase  42.76 
 
 
379 aa  234  2.0000000000000002e-60  Bacillus cereus AH187  Bacteria  normal  0.814074  n/a   
 
 
-
 
NC_008025  Dgeo_1179  acyl-CoA dehydrogenase-like protein  43.85 
 
 
392 aa  234  2.0000000000000002e-60  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0136  acyl-CoA dehydrogenase domain protein  40.18 
 
 
379 aa  234  2.0000000000000002e-60  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0198  butyryl-CoA dehydrogenase  39.95 
 
 
386 aa  234  2.0000000000000002e-60  Paracoccus denitrificans PD1222  Bacteria  normal  0.286709  normal 
 
 
-
 
NC_005957  BT9727_5025  butyryl-CoA dehydrogenase (short-chain acyl-CoA dehydrogenase)  42.76 
 
 
379 aa  233  3e-60  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0459  acyl-CoA dehydrogenase domain protein  41.61 
 
 
376 aa  233  4.0000000000000004e-60  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.672922 
 
 
-
 
NC_012034  Athe_1232  acyl-CoA dehydrogenase domain protein  40.38 
 
 
381 aa  233  4.0000000000000004e-60  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_3827  bytyryl-CoA dehydrogenase (short-chain-acyl-CoA dehydrogenase)  41.8 
 
 
379 aa  233  4.0000000000000004e-60  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3862  acyl-CoA dehydrogenase domain-containing protein  42.17 
 
 
379 aa  233  5e-60  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5139  acyl-CoA dehydrogenase domain-containing protein  42.43 
 
 
379 aa  232  7.000000000000001e-60  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4730  acyl-CoA dehydrogenase domain protein  40.5 
 
 
376 aa  232  7.000000000000001e-60  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1109  acyl-CoA dehydrogenase domain-containing protein  43.06 
 
 
388 aa  232  8.000000000000001e-60  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.168915  normal 
 
 
-
 
NC_013730  Slin_5641  Butyryl-CoA dehydrogenase  40.47 
 
 
379 aa  232  8.000000000000001e-60  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  39.71 
 
 
379 aa  232  9e-60  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3683  acyl-CoA dehydrogenase domain-containing protein  44.59 
 
 
384 aa  232  1e-59  Burkholderia phymatum STM815  Bacteria  normal  normal  0.685138 
 
 
-
 
NC_008687  Pden_2906  acyl-CoA dehydrogenase domain-containing protein  44.91 
 
 
375 aa  231  1e-59  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2175  acyl-CoA dehydrogenase domain-containing protein  43.25 
 
 
386 aa  231  1e-59  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3822  acyl-CoA dehydrogenase domain protein  40.94 
 
 
379 aa  231  1e-59  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.962066  normal  0.565208 
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  39.89 
 
 
381 aa  231  2e-59  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3165  acyl-CoA dehydrogenase domain-containing protein  39.54 
 
 
445 aa  231  2e-59  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.256023  normal 
 
 
-
 
NC_008782  Ajs_0130  acyl-CoA dehydrogenase domain-containing protein  44.19 
 
 
385 aa  231  2e-59  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0148  acyl-CoA dehydrogenase domain protein  44.19 
 
 
385 aa  231  2e-59  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2300  acyl-CoA dehydrogenase domain-containing protein  39.66 
 
 
414 aa  230  4e-59  Roseiflexus sp. RS-1  Bacteria  normal  0.242601  normal 
 
 
-
 
NC_014158  Tpau_1058  acyl-CoA dehydrogenase domain protein  38.3 
 
 
386 aa  229  5e-59  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.405365  n/a   
 
 
-
 
NC_009338  Mflv_4743  butyryl-CoA dehydrogenase  37.89 
 
 
417 aa  229  6e-59  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3775  acyl-CoA dehydrogenase domain-containing protein  40 
 
 
388 aa  229  7e-59  Roseiflexus sp. RS-1  Bacteria  normal  0.0119178  unclonable  0.00000752707 
 
 
-
 
NC_012854  Rleg_6429  Butyryl-CoA dehydrogenase  43.56 
 
 
386 aa  229  8e-59  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121067 
 
 
-
 
NC_011725  BCB4264_A5465  acyl-CoA dehydrogenase  36.91 
 
 
381 aa  229  9e-59  Bacillus cereus B4264  Bacteria  hitchhiker  0.000680329  n/a   
 
 
-
 
NC_014230  CA2559_06620  butyryl-CoA dehydrogenase  39 
 
 
380 aa  228  1e-58  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0298  acyl-CoA dehydrogenase domain protein  41.22 
 
 
381 aa  228  1e-58  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4257  putative acyl-CoA dehydrogenase  40.81 
 
 
376 aa  228  1e-58  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.217203 
 
 
-
 
NC_008726  Mvan_1719  acyl-CoA dehydrogenase domain-containing protein  37.98 
 
 
389 aa  228  1e-58  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1282  putative acyl-CoA dehydrogenase  40.88 
 
 
392 aa  228  2e-58  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3882  butyryl-CoA dehydrogenase  39.2 
 
 
395 aa  227  2e-58  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7329  Acyl-CoA dehydrogenase  44.18 
 
 
383 aa  228  2e-58  Burkholderia sp. 383  Bacteria  normal  normal  0.948773 
 
 
-
 
NC_010338  Caul_0274  acyl-CoA dehydrogenase domain-containing protein  42.28 
 
 
382 aa  228  2e-58  Caulobacter sp. K31  Bacteria  normal  0.630772  normal  0.481537 
 
 
-
 
NC_010338  Caul_3055  acyl-CoA dehydrogenase domain-containing protein  44.56 
 
 
379 aa  228  2e-58  Caulobacter sp. K31  Bacteria  normal  0.350853  normal 
 
 
-
 
NC_010002  Daci_5985  acyl-CoA dehydrogenase domain-containing protein  40.19 
 
 
376 aa  227  2e-58  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00997774 
 
 
-
 
NC_013510  Tcur_4115  acyl-CoA dehydrogenase domain protein  42.42 
 
 
390 aa  227  3e-58  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2353  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  39.11 
 
 
378 aa  227  3e-58  Dechloromonas aromatica RCB  Bacteria  normal  0.663187  normal  0.71414 
 
 
-
 
NC_007777  Francci3_1549  butyryl-CoA dehydrogenase  43.04 
 
 
387 aa  227  3e-58  Frankia sp. CcI3  Bacteria  normal  0.431805  normal 
 
 
-
 
NC_013510  Tcur_2589  acyl-CoA dehydrogenase domain protein  42.42 
 
 
390 aa  227  3e-58  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.0000683478  n/a   
 
 
-
 
NC_010511  M446_2476  acyl-CoA dehydrogenase domain-containing protein  42.12 
 
 
380 aa  227  3e-58  Methylobacterium sp. 4-46  Bacteria  normal  0.893721  normal  0.185436 
 
 
-
 
NC_008578  Acel_0409  acyl-CoA dehydrogenase domain-containing protein  43.03 
 
 
406 aa  227  3e-58  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0096  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  37.76 
 
 
378 aa  226  4e-58  Dechloromonas aromatica RCB  Bacteria  normal  0.0160842  normal 
 
 
-
 
NC_011831  Cagg_0397  acyl-CoA dehydrogenase domain protein  38.48 
 
 
379 aa  227  4e-58  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.362138 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>