| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1327 |
|---|
| Symbol | |
|---|
| ID | 3933774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1291515 |
|---|
| End bp | 1292666 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637903677 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_509269 |
|---|
| Protein GI | 89053818 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACA AATCGTTCCT CAGCTGGCCG TTTTTTGAAG AGCGGCACCG TGATCTGGCA
GGCGCGCTTG ATGCTTGGGC GACGGCGGAG CTGGCCGGTA TCGACCACAG CGATACCGAT
GCCGCCTGTC GCGCTTTGGT CGCTGCATTG GGGCAGGGGG GCTGGCTGAA CCATGCCGCC
GTGAACCCAA AGGGCGAGGC CAAACTGGAC GTGCGCACCC TGTGCCTGAT CCGTGAAACA
CTGGCACGTC ACGACGGGTT GGCGGATTTT GCTTTTGCGA TGCAGGGCCT TGGGACCGGC
GCGATCTCTC TGTTCGGGAC GGATGCGCAG AAAGTCGAAT GGCTGCCAAA GGTCCGCGCA
GGCACCGCGA TTTCCGCCTT CGCCCTGACG GAGCCGCAAT CCGGCTCCGA CGTCGCGAAC
TCCACCATGA CGGCGACGCT GGACGGGGAC GTTTATGTTC TGGACGGGGA GAAGACATGG
ATCAGCAATG GCGGCATCGC GGATGTCTAC ACGGTCTTTG CGCGCACCGG GGACGCGCCC
GGCGCGCGGG GATTGTCGGC CTTTGTCGTG CCTGCGGACG CGCCCGGTCT TGAGGTCACT
GAACGGCTCG AGACCATCGC ACCGCATCCC CTCTCCACCC TCCGGTTCAG CGGGTGTCGT
GTGCCCGCCT CCGCGCGTCT TGGCGAAAGC GGGGCGGGGT TTAAGATCGC CATGTCGGTC
CTTGATGTGT TCCGCTCAAC AGTGGCGGCG GCGGCGCTTG GTTTCGCGCG GCGGGCACTG
GATGAGGCGA TGGCCCGCGT CACCACCCGC CATGTCCAGG GCGCGCCGCT GTTTGATCTG
CAAATGGTAC AGGGTCACAT CGCCGACATG GCCGTGGATA TCGACGCGAG CGCGCTTCTG
ATCTACCGCG CCGCCTGGGC CAAGGATAGC GGCGCTCCGC GCGTGACGCG AGAGGCGGCG
ATGGCCAAGC TGTTCTCCAC TGACCAGGCG CAAAAGGTCA TTGACCGAGC CGTGCAATTG
CATGGCGGAG ACGGCGTCAG GTCCGGCGAG ACTGTTGAGA AACTCTACCG TGAAATCAGG
GCGTTGCGCA TCTATGAGGG TGCCTCGGAC GTCCAGCGTG TGATCATCGC GCGCCAGACG
ATCGGAGCGT AA
|
|---|
| Protein sequence | MADKSFLSWP FFEERHRDLA GALDAWATAE LAGIDHSDTD AACRALVAAL GQGGWLNHAA
VNPKGEAKLD VRTLCLIRET LARHDGLADF AFAMQGLGTG AISLFGTDAQ KVEWLPKVRA
GTAISAFALT EPQSGSDVAN STMTATLDGD VYVLDGEKTW ISNGGIADVY TVFARTGDAP
GARGLSAFVV PADAPGLEVT ERLETIAPHP LSTLRFSGCR VPASARLGES GAGFKIAMSV
LDVFRSTVAA AALGFARRAL DEAMARVTTR HVQGAPLFDL QMVQGHIADM AVDIDASALL
IYRAAWAKDS GAPRVTREAA MAKLFSTDQA QKVIDRAVQL HGGDGVRSGE TVEKLYREIR
ALRIYEGASD VQRVIIARQT IGA
|
|---|
| |