Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1109 |
Symbol | |
ID | 5538575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1435571 |
End bp | 1436737 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640893243 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | YP_001431226 |
Protein GI | 156741097 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.168915 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGTACG ACCTTCCCGA AGATCTCCGG CTCTTGCGGC AGACCGTCCG CGACTTCGCC AACAAGGAGA TCGCCCCAAT CGCCCGTGAA ATCGATGAAG AGGAGCGGGT TCCGTTCGAG ATGCTGCGCA AAGCTGCCGA TCTTGGTCTG CTCGGCGTCC CCTTTCCCGA AGAGTACGGC GGCTCCGAAG CCGGGATTAC CGGCTACTGC GTGTTGCTGG AAGAGGTCAA CCGGAAGTGC GCCTCTACCG GCACGATTAT CGGCGCGCAC ACACAACTCT GCTCCATGTC GATCCATCTC GCCGGGACTC CCGACCAGAA GGAACGCTAC CTGCGCCCGC TGATCGAGGG ACGTATGTGG GGCGCATGGG CGCTGACTGA GCCGAATGCG GGCAGTGACG CCGCCCACAT CCGCACGACT GCTGTGCGCG ACGGCGACTC CTGGGTGCTC AACGGCGGCA AGATGTGGAT CACCAACGGC TCGTTTGCTG ATGTGATTGT GGTGTTTGCC AATACCGATC CAAGCCTCGG ACCGCGCGGC ATCACTGCGT TCATCGTCGA GAAGGGTTTC CCTGGCTTCA AGGTGGGCAA AGTTGAGCCG AAGATGGGGT TGCGCGCGTC GCACACGGCA TCGATCTTCT TCGAGGATTG TCGCGTTCCG GCAGCAAATG TGCTCGGCGA AGTCGGGCGC GGGTATGCGC TGGCGCTCCA GACGCTCGAC ATCGGGCGGT GCGGACTGGG CGCGGCGTGT CTGGGAGCGG CGAAAGAAGC GTATGAATTG TCGCTCAAGT ATGCCGTCGA GCGGCAACAG TTCGGTCGTC CAATCGCCGA TTTCCAGGCA ATTCAGTTCA AACTGGCGGA TATGGCGGTG AAAATCTACA CGATGGAGCA GATCGTGTAC GATTGCGCAA AGAAGGTGGA TCGCGGCGAG ACGGCGCGGC TGGAGTCGAG CATTGTCAAA CTCTACTGCA CCGATGCGCT GGCATGGATC CTCGACGAAG CCATTCAAAT CCACGGTGGC ATGGGATTCT CGCGTGAACT GCCGCTCGAA CGCATGTACC GCGATGCGCG CGTCTTCCGC ATCTACGAGG GAACCAACGA GATTCAGCGG TATGTCATCG CCAGTGAACT CCTGAAGACG GTCGGGCACA AGGTGCGGCT GTACTGA
|
Protein sequence | MEYDLPEDLR LLRQTVRDFA NKEIAPIARE IDEEERVPFE MLRKAADLGL LGVPFPEEYG GSEAGITGYC VLLEEVNRKC ASTGTIIGAH TQLCSMSIHL AGTPDQKERY LRPLIEGRMW GAWALTEPNA GSDAAHIRTT AVRDGDSWVL NGGKMWITNG SFADVIVVFA NTDPSLGPRG ITAFIVEKGF PGFKVGKVEP KMGLRASHTA SIFFEDCRVP AANVLGEVGR GYALALQTLD IGRCGLGAAC LGAAKEAYEL SLKYAVERQQ FGRPIADFQA IQFKLADMAV KIYTMEQIVY DCAKKVDRGE TARLESSIVK LYCTDALAWI LDEAIQIHGG MGFSRELPLE RMYRDARVFR IYEGTNEIQR YVIASELLKT VGHKVRLY
|
| |