More than 300 homologs were found in PanDaTox collection
for query gene Pmen_3118 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_3118  binding-protein-dependent transport systems inner membrane component  100 
 
 
242 aa  450  1e-125  Pseudomonas mendocina ymp  Bacteria  normal  0.0982336  normal  0.0324011 
 
 
-
 
NC_007963  Csal_2946  binding-protein-dependent transport systems inner membrane component  55.14 
 
 
255 aa  217  1e-55  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0159646  n/a   
 
 
-
 
NC_011205  SeD_A2508  inner membrane ABC transporter permease YehW  53.33 
 
 
243 aa  212  3.9999999999999995e-54  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.938307  normal 
 
 
-
 
NC_011080  SNSL254_A2351  inner membrane ABC transporter permease protein YehW  53.33 
 
 
243 aa  212  3.9999999999999995e-54  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2396  inner membrane ABC transporter permease YehW  52.86 
 
 
243 aa  211  1e-53  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2400  inner membrane ABC transporter permease YehW  52.86 
 
 
243 aa  211  1e-53  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.887466  normal 
 
 
-
 
NC_011149  SeAg_B2307  inner membrane ABC transporter permease protein YehW  53.33 
 
 
243 aa  211  1e-53  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02058  predicted transporter subunit: membrane component of ABC superfamily  51.52 
 
 
243 aa  209  2e-53  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0845  ABC transporter, quaternary amine uptake (QAT) family, permease protein  51.52 
 
 
243 aa  209  2e-53  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3253  ABC transporter, quaternary amine uptake (QAT) family, permease protein  51.52 
 
 
243 aa  209  2e-53  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000564908 
 
 
-
 
NC_012892  B21_02016  hypothetical protein  51.52 
 
 
243 aa  209  2e-53  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2263  quaternary amine ABC transporter permease  51.52 
 
 
243 aa  209  2e-53  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0916  quaternary amine ABC transporter permease  51.52 
 
 
243 aa  210  2e-53  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.636939 
 
 
-
 
NC_010468  EcolC_1519  binding-protein-dependent transport systems inner membrane component  51.52 
 
 
243 aa  209  2e-53  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2416  quaternary amine ABC transporter permease  51.52 
 
 
243 aa  209  2e-53  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1529  binding-protein-dependent transport systems inner membrane component  51.08 
 
 
243 aa  209  5e-53  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1448  binding-protein-dependent transport systems inner membrane component  50.87 
 
 
260 aa  206  2e-52  Serratia proteamaculans 568  Bacteria  normal  0.320512  normal 
 
 
-
 
NC_004310  BR0222  ABC transporter, permease protein  50 
 
 
248 aa  201  9.999999999999999e-51  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0213  ABC transporter, permease protein  50 
 
 
248 aa  201  9.999999999999999e-51  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0296  binding-protein-dependent transport systems inner membrane component  49.76 
 
 
248 aa  194  1e-48  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2783  quaternary amine ABC transporter permease  46.15 
 
 
278 aa  194  1e-48  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2862  binding-protein-dependent transport systems inner membrane component  46.15 
 
 
278 aa  193  2e-48  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.01956  n/a   
 
 
-
 
NC_012850  Rleg_0148  binding-protein-dependent transport systems inner membrane component  47.96 
 
 
249 aa  191  9e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0496  ABC proline/glycine betaine transporter, inner membrane subunit  54.45 
 
 
255 aa  189  2.9999999999999997e-47  Burkholderia sp. 383  Bacteria  normal  0.792199  normal 
 
 
-
 
NC_010086  Bmul_3510  binding-protein-dependent transport systems inner membrane component  53.93 
 
 
263 aa  189  2.9999999999999997e-47  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0142  binding-protein-dependent transport systems inner membrane component  50 
 
 
249 aa  189  4e-47  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0957565 
 
 
-
 
NC_008391  Bamb_4538  binding-protein-dependent transport systems inner membrane component  53.3 
 
 
255 aa  188  8e-47  Burkholderia ambifaria AMMD  Bacteria  normal  0.52595  normal 
 
 
-
 
NC_010552  BamMC406_5062  binding-protein-dependent transport systems inner membrane component  52.79 
 
 
255 aa  187  1e-46  Burkholderia ambifaria MC40-6  Bacteria  normal  0.646466  normal 
 
 
-
 
NC_009436  Ent638_2727  binding-protein-dependent transport systems inner membrane component  49.57 
 
 
245 aa  186  2e-46  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4887  binding-protein-dependent transport systems inner membrane component  50.23 
 
 
247 aa  186  3e-46  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.659147  hitchhiker  0.00742235 
 
 
-
 
NC_007908  Rfer_1857  binding-protein-dependent transport systems inner membrane component  55.5 
 
 
256 aa  186  4e-46  Rhodoferax ferrireducens T118  Bacteria  normal  0.930718  n/a   
 
 
-
 
NC_010515  Bcenmc03_5138  binding-protein-dependent transport systems inner membrane component  52.88 
 
 
255 aa  185  6e-46  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.316717  normal 
 
 
-
 
NC_008061  Bcen_3223  binding-protein-dependent transport systems inner membrane component  52.88 
 
 
255 aa  184  8e-46  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.362528  n/a   
 
 
-
 
NC_008543  Bcen2424_5144  binding-protein-dependent transport systems inner membrane component  52.88 
 
 
255 aa  184  8e-46  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0793163  normal 
 
 
-
 
NC_009620  Smed_4640  binding-protein-dependent transport systems inner membrane component  49.76 
 
 
246 aa  182  3e-45  Sinorhizobium medicae WSM419  Bacteria  normal  0.0951209  normal  0.118631 
 
 
-
 
NC_007948  Bpro_3623  binding-protein-dependent transport systems inner membrane component  50.48 
 
 
252 aa  177  1e-43  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2382  binding-protein dependent transport system inner membrane protein  45.82 
 
 
260 aa  174  9e-43  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.813569  n/a   
 
 
-
 
NC_009076  BURPS1106A_1992  amine ABC transporter, permease protein  49.05 
 
 
272 aa  174  9.999999999999999e-43  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1973  amine ABC transporter, permease protein  49.05 
 
 
272 aa  174  9.999999999999999e-43  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1141  ABC transporter, permease protein  49.05 
 
 
246 aa  174  9.999999999999999e-43  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0821486  n/a   
 
 
-
 
NC_011666  Msil_2136  binding-protein-dependent transport systems inner membrane component  51.63 
 
 
248 aa  174  9.999999999999999e-43  Methylocella silvestris BL2  Bacteria  n/a    normal  0.961929 
 
 
-
 
NC_007434  BURPS1710b_2131  ABC transporter, permease protein  49.05 
 
 
272 aa  174  9.999999999999999e-43  Burkholderia pseudomallei 1710b  Bacteria  normal  0.397658  n/a   
 
 
-
 
NC_008836  BMA10229_A0240  amine ABC transporter, permease protein  49.05 
 
 
272 aa  174  9.999999999999999e-43  Burkholderia mallei NCTC 10229  Bacteria  normal  0.56038  n/a   
 
 
-
 
NC_009080  BMA10247_0919  amine ABC transporter, permease protein  49.05 
 
 
272 aa  174  9.999999999999999e-43  Burkholderia mallei NCTC 10247  Bacteria  normal  0.985115  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1581  amine ABC transporter, permease protein  49.05 
 
 
272 aa  174  9.999999999999999e-43  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2381  ABC transporter, permease protein  50.48 
 
 
278 aa  169  3e-41  Burkholderia thailandensis E264  Bacteria  normal  0.540058  n/a   
 
 
-
 
NC_014212  Mesil_0910  binding-protein-dependent transport systems inner membrane component  47.41 
 
 
249 aa  157  2e-37  Meiothermus silvanus DSM 9946  Bacteria  normal  0.646998  normal  0.0333607 
 
 
-
 
NC_009621  Smed_5104  binding-protein-dependent transport systems inner membrane component  40 
 
 
251 aa  138  6e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.245299 
 
 
-
 
NC_013411  GYMC61_1174  binding-protein-dependent transport systems inner membrane component  45.2 
 
 
209 aa  135  5e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008062  Bcen_5735  binding-protein-dependent transport systems inner membrane component  42.13 
 
 
238 aa  134  9.999999999999999e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.224143  n/a   
 
 
-
 
NC_010512  Bcenmc03_6581  binding-protein-dependent transport systems inner membrane component  42.13 
 
 
238 aa  134  9.999999999999999e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.191415  normal  0.0371863 
 
 
-
 
NC_008544  Bcen2424_6099  binding-protein-dependent transport systems inner membrane component  42.13 
 
 
238 aa  134  9.999999999999999e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.840273  normal 
 
 
-
 
NC_013223  Dret_0769  binding-protein-dependent transport systems inner membrane component  41.07 
 
 
245 aa  133  1.9999999999999998e-30  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2912  binding-protein-dependent transport systems inner membrane component  41.09 
 
 
250 aa  133  3e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.105441 
 
 
-
 
NC_012793  GWCH70_0296  binding-protein-dependent transport systems inner membrane component  42.7 
 
 
211 aa  132  3.9999999999999996e-30  Geobacillus sp. WCH70  Bacteria  normal  0.4946  n/a   
 
 
-
 
NC_007509  Bcep18194_C7550  ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit  42.49 
 
 
238 aa  132  6.999999999999999e-30  Burkholderia sp. 383  Bacteria  normal  0.93042  normal  0.508329 
 
 
-
 
NC_010322  PputGB1_0915  binding-protein-dependent transport systems inner membrane component  40.39 
 
 
237 aa  131  6.999999999999999e-30  Pseudomonas putida GB-1  Bacteria  normal  0.144284  normal  0.229592 
 
 
-
 
NC_002976  SERP0386  ABC transporter, permease protein  40.64 
 
 
504 aa  131  1.0000000000000001e-29  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1845  binding-protein-dependent transport systems inner membrane component  41.34 
 
 
236 aa  131  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.309897  normal 
 
 
-
 
NC_011083  SeHA_C1664  binding-protein-dependent transport systems inner membrane component  41.34 
 
 
236 aa  131  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1596  binding-protein-dependent transport systems inner membrane component  41.34 
 
 
236 aa  131  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.82645  normal  0.733145 
 
 
-
 
NC_009436  Ent638_1924  binding-protein-dependent transport systems inner membrane component  40.98 
 
 
245 aa  131  1.0000000000000001e-29  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1605  binding-protein-dependent transport systems inner membrane component  41.34 
 
 
236 aa  131  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1678  binding-protein-dependent transport systems inner membrane component  41.34 
 
 
236 aa  131  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.122529  n/a   
 
 
-
 
NC_002947  PP_0871  binding-protein-dependent transport systems inner membrane component  40.39 
 
 
247 aa  129  3e-29  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0901  binding-protein-dependent transport systems inner membrane component  40.39 
 
 
237 aa  129  3e-29  Pseudomonas putida F1  Bacteria  normal  normal  0.229309 
 
 
-
 
NC_010718  Nther_0120  binding-protein-dependent transport systems inner membrane component  43.11 
 
 
281 aa  129  6e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_0746  substrate-binding region of ABC-type glycine betaine transport system  41.18 
 
 
504 aa  128  7.000000000000001e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3333  Substrate-binding region of ABC-type glycine betaine transport system  36.73 
 
 
524 aa  128  7.000000000000001e-29  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000937167  n/a   
 
 
-
 
NC_009632  SaurJH1_0763  substrate-binding region of ABC-type glycine betaine transport system  41.18 
 
 
504 aa  128  7.000000000000001e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.458546  n/a   
 
 
-
 
NC_007952  Bxe_B2995  glycine betaine/choline/proline ABC transporter inner membrane protein  41.53 
 
 
238 aa  128  1.0000000000000001e-28  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0770  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
222 aa  127  2.0000000000000002e-28  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4307  binding-protein-dependent transport systems inner membrane component  40.44 
 
 
237 aa  125  4.0000000000000003e-28  Pseudomonas putida W619  Bacteria  normal  0.530017  normal  0.591477 
 
 
-
 
NC_008463  PA14_13610  ABC transporter permease  40.66 
 
 
240 aa  125  5e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004116  SAG0243  amino acid ABC transporter, permease protein  40.22 
 
 
211 aa  124  1e-27  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1218  ABC transporter permease  39.56 
 
 
240 aa  124  1e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1070  substrate-binding region of ABC-type glycine betaine transport system  50.34 
 
 
525 aa  124  1e-27  Maricaulis maris MCS10  Bacteria  normal  0.019749  normal 
 
 
-
 
NC_013204  Elen_0084  Substrate-binding region of ABC-type glycine betaine transport system  39.18 
 
 
528 aa  123  3e-27  Eggerthella lenta DSM 2243  Bacteria  normal  0.689632  normal 
 
 
-
 
NC_013037  Dfer_1250  binding-protein-dependent transport systems inner membrane component  45.45 
 
 
525 aa  122  4e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.615651  normal  0.522042 
 
 
-
 
NC_007973  Rmet_1598  substrate-binding region of ABC-type glycine betaine transport system  41.79 
 
 
516 aa  122  4e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.144217  normal 
 
 
-
 
NC_010001  Cphy_0119  substrate-binding region of ABC-type glycine betaine transport system  35.6 
 
 
523 aa  122  4e-27  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000124345  n/a   
 
 
-
 
NC_011891  A2cp1_3373  Substrate-binding region of ABC-type glycine betaine transport system  45.56 
 
 
489 aa  122  6e-27  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_15730  ABC-type proline/glycine betaine transport system, permease component  42.64 
 
 
251 aa  122  6e-27  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3299  Substrate-binding region of ABC-type glycine betaine transport system  44 
 
 
490 aa  121  9e-27  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1554  binding-protein-dependent transport systems inner membrane component  40 
 
 
246 aa  121  9e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001531  putative ABC transporter permease  36.87 
 
 
244 aa  121  9e-27  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001529  probable inner-membrane permease  40.11 
 
 
199 aa  121  9.999999999999999e-27  Vibrio sp. Ex25  Bacteria  normal  0.90895  n/a   
 
 
-
 
NC_013093  Amir_2050  binding-protein-dependent transport systems inner membrane component  44.72 
 
 
258 aa  120  1.9999999999999998e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2355  binding-protein-dependent transport systems inner membrane component  42.46 
 
 
243 aa  120  1.9999999999999998e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5205  Substrate-binding region of ABC-type glycine betaine transport system  42.11 
 
 
537 aa  120  1.9999999999999998e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.057164  normal 
 
 
-
 
NC_007492  Pfl01_0806  binding-protein dependent transport system inner membrane protein  37.24 
 
 
238 aa  119  3e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.674901 
 
 
-
 
NC_013517  Sterm_3032  Substrate-binding region of ABC-type glycine betaine transport system  33.68 
 
 
531 aa  119  4.9999999999999996e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.367999  n/a   
 
 
-
 
NC_009727  CBUD_1923  glycine betaine transport system permease protein  38.66 
 
 
526 aa  119  6e-26  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1127  binding-protein-dependent transport systems inner membrane component  35.59 
 
 
216 aa  118  7e-26  Petrotoga mobilis SJ95  Bacteria  normal  0.721959  n/a   
 
 
-
 
NC_009953  Sare_1621  binding-protein-dependent transport systems inner membrane component  40.54 
 
 
261 aa  118  7e-26  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0317  binding-protein-dependent transport systems inner membrane component  43.79 
 
 
519 aa  117  9.999999999999999e-26  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.417886 
 
 
-
 
NC_010117  COXBURSA331_A0267  quaternary amine ABC transporter periplasmic substrate-binding protein  38.66 
 
 
526 aa  117  1.9999999999999998e-25  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2357  amino acid ABC transporter, permease protein  39.55 
 
 
211 aa  116  3e-25  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1634  binding-protein-dependent transport systems inner membrane component  43.29 
 
 
261 aa  116  3e-25  Salinispora tropica CNB-440  Bacteria  normal  0.649793  normal  0.788807 
 
 
-
 
NC_007005  Psyr_4252  binding-protein dependent transport system inner membrane protein  38 
 
 
237 aa  115  5e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
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