| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1598 |
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| Symbol | |
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| ID | 4038401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1722932 |
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| End bp | 1724482 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637976982 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_583750 |
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| Protein GI | 94310540 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.144217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTCATT CATTCACGCG GTTCGCCCTC CGGCAATGCC GCTTCCTTGG CGCGCTGTTA
GTGCTGTTGG TCATGGCCTG TGGTCCGGCT GCCGGCGCCG ACACGCTGCG CATCGGTTCC
AAGCGCTTTA CCGAGTCGTA CATCCTGGGC GAGATCCTGA GGCAGGTTGC CGAGCCGCAC
GGCCCGGTGC GATATCTGCC GGGGCTGGGC AACACCGCCA TCGTGTTCCA GGCGCTCCAG
GCCGGAAGCA TCGACCTATA CCCGGACTAC ACCGGCACGC TCGCCAGCGA GATCCTGAGA
CTACCCGGTA CCGCCACGCT GGAGCAGATC AACGCCGCGC TGGCGCCAAT GGGATTGGGC
GCGGCCATCG CGCTCGGCTT CGACAATACC TATGCGATCG CGGTCTCCGA TGCCCAGCCA
GTCAGCCTGC GCGCGCTTGG CGACCTTGCG GGGCAGCCGG ACCTGCGGAT CGCCCTGTCG
CACGAGTTTC TTGGCCGTGC CGATGGCTGG CCCGCGCTCA AGCGCGCGTA TGGACTGCCT
CAGCGACCAT CCGGGATCGA TCATGGCCTC GCCTACGAGG CATTGGCGCA CGGACAGATT
GACGCGACCG ACATCTATTC GACCGATGCC AAGATCAGCA AGTACCATCT GCGCGTGCTC
GAGGACAACC AGCGCGTGTT TCCGCGCTAC GAGGCGGTGA TCGTCTACCG GCTCGACGTG
CCGACGCGTC ATGCGGCGGC GTGGCAGGCA CTGCGGCGTC TGGCTGGCAC TATCGGAACG
CAGGACATGA TCGCCATGAA TGCGGCAGCG GAAGTCGATG GGAAGACGTT CTCTGCTGTG
GCCCGCAATT TCCTGTCCGG GCATCCAGGG GTATCGGCGG ACGGTGTGGC GAGATCGGAT
CAGCGCGACA ACCTGGCGGG GATGCTGACG AACGCGGATA CCGGGCGCCT GACTGTCCGG
CATCTGGCGC TGGTCGGCGG CTCGGTGGGG GCCGCCACGC TGGTCGGCGT GCCGCTGGGT
GTGGTGGCTG CGCGCCGGCG CCGGTTCGGT CAGGTGCTGC TGGCCTTGGT CGGTATGTTG
CAGACCATCC CGTCATTGGC GCTGCTGGCG ATGCTGATAC CGGCGCTGGG CCGCATCGGC
ATCTGGCCGG CACTGGTCGC GCTGTTCCTC TATGCTTTGC TGCCGATCGT GCGCAACGCG
TGCACCGGGT TGCAGGAAGT GCCGGCGGGG ATGCGCGATG CCGCCCTGGC ACTGGGGATG
CGGCCGTTGC AAGTGCTCTG GTACGTGGAG TTGCCGCTCT CCCTGCCGGT GTTGCTGGCC
GGTATCAAGA CCGCAGCCAT CATCAGCGTA GGCACGGCGA CCATCGCTGC GTTTGTCGGC
GCGGGCGGGT ACGGCGAGCG GATCGTGACC GGACTGGCGC TGAACGACGC CACCCAGCTT
CTCGGCGGCG CGATTCCGGC CGCGCTGCTG GCATTGGTGG TGCAGGGTGG CTTTGGTCTG
GCCGAATACT TGCGGGATCG AAAGCGTGCA CGCATGGCGA AATTTGGGTA A
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| Protein sequence | MSHSFTRFAL RQCRFLGALL VLLVMACGPA AGADTLRIGS KRFTESYILG EILRQVAEPH
GPVRYLPGLG NTAIVFQALQ AGSIDLYPDY TGTLASEILR LPGTATLEQI NAALAPMGLG
AAIALGFDNT YAIAVSDAQP VSLRALGDLA GQPDLRIALS HEFLGRADGW PALKRAYGLP
QRPSGIDHGL AYEALAHGQI DATDIYSTDA KISKYHLRVL EDNQRVFPRY EAVIVYRLDV
PTRHAAAWQA LRRLAGTIGT QDMIAMNAAA EVDGKTFSAV ARNFLSGHPG VSADGVARSD
QRDNLAGMLT NADTGRLTVR HLALVGGSVG AATLVGVPLG VVAARRRRFG QVLLALVGML
QTIPSLALLA MLIPALGRIG IWPALVALFL YALLPIVRNA CTGLQEVPAG MRDAALALGM
RPLQVLWYVE LPLSLPVLLA GIKTAAIISV GTATIAAFVG AGGYGERIVT GLALNDATQL
LGGAIPAALL ALVVQGGFGL AEYLRDRKRA RMAKFG
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