More than 300 homologs were found in PanDaTox collection
for query gene Mnod_3224 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_3224  histone family protein DNA-binding protein  100 
 
 
90 aa  179  1e-44  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0550  DNA-binding protein HU-beta  50 
 
 
92 aa  85.1  3e-16  Bartonella bacilliformis KC583  Bacteria  normal  0.169626  n/a   
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  42.22 
 
 
92 aa  81.6  0.000000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  40 
 
 
90 aa  80.5  0.000000000000007  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  47.78 
 
 
90 aa  79.7  0.00000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  43.33 
 
 
94 aa  79.7  0.00000000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  43.33 
 
 
94 aa  79.7  0.00000000000001  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  47.78 
 
 
90 aa  79.7  0.00000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  43.33 
 
 
90 aa  79.3  0.00000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  79  0.00000000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  37.78 
 
 
90 aa  78.2  0.00000000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  38.89 
 
 
90 aa  78.6  0.00000000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  44.44 
 
 
90 aa  78.6  0.00000000000003  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  38.89 
 
 
90 aa  78.2  0.00000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  37.78 
 
 
90 aa  78.2  0.00000000000004  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  45.56 
 
 
90 aa  78.2  0.00000000000004  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  43.33 
 
 
90 aa  77  0.00000000000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_004347  SO_0548  HU family DNA-binding protein  38.89 
 
 
90 aa  77  0.00000000000008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  43.33 
 
 
90 aa  77  0.00000000000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  43.33 
 
 
91 aa  77  0.00000000000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  77  0.00000000000009  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  46.67 
 
 
90 aa  76.3  0.0000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  38.89 
 
 
90 aa  76.3  0.0000000000001  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0547  histone family protein DNA-binding protein  38.89 
 
 
90 aa  76.6  0.0000000000001  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0875  histone family protein DNA-binding protein  45.56 
 
 
90 aa  76.3  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.757232  normal 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  75.9  0.0000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  42.22 
 
 
92 aa  75.9  0.0000000000002  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  75.9  0.0000000000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  38.89 
 
 
90 aa  75.9  0.0000000000002  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  75.9  0.0000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1826  hypothetical protein  42.7 
 
 
92 aa  75.1  0.0000000000003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1822  hypothetical protein  42.7 
 
 
92 aa  75.1  0.0000000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  43.33 
 
 
90 aa  75.1  0.0000000000003  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  43.33 
 
 
90 aa  75.1  0.0000000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3482  histone family protein DNA-binding protein  38.89 
 
 
90 aa  75.1  0.0000000000003  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  74.7  0.0000000000004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  74.7  0.0000000000004  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  74.7  0.0000000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  74.7  0.0000000000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  74.7  0.0000000000004  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_010831  Cphamn1_0324  histone family protein DNA-binding protein  39.08 
 
 
90 aa  74.3  0.0000000000005  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.064189  normal  0.0110025 
 
 
-
 
NC_013162  Coch_1967  histone family protein DNA-binding protein  38.89 
 
 
92 aa  74.3  0.0000000000005  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.00606172  n/a   
 
 
-
 
NC_012855  Rpic12D_5039  histone family protein DNA-binding protein  41.11 
 
 
94 aa  74.3  0.0000000000005  Ralstonia pickettii 12D  Bacteria  normal  0.889388  normal 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  40 
 
 
90 aa  74.3  0.0000000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_008527  LACR_0525  nucleoid protein Hbs  39.77 
 
 
91 aa  74.3  0.0000000000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00046461  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  43.33 
 
 
90 aa  73.9  0.0000000000006  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  73.6  0.0000000000008  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  44.44 
 
 
90 aa  73.6  0.0000000000008  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3943  histone family protein DNA-binding protein  37.78 
 
 
90 aa  73.6  0.0000000000009  Shewanella baltica OS195  Bacteria  normal  0.37618  normal 
 
 
-
 
NC_009052  Sbal_0507  histone family protein DNA-binding protein  37.78 
 
 
90 aa  73.6  0.0000000000009  Shewanella baltica OS155  Bacteria  normal  0.0267079  n/a   
 
 
-
 
NC_011663  Sbal223_3761  histone family protein DNA-binding protein  37.78 
 
 
90 aa  73.6  0.0000000000009  Shewanella baltica OS223  Bacteria  normal  normal  0.768478 
 
 
-
 
NC_009665  Shew185_3817  histone family protein DNA-binding protein  37.78 
 
 
90 aa  73.6  0.0000000000009  Shewanella baltica OS185  Bacteria  normal  0.531766  n/a   
 
 
-
 
NC_009438  Sputcn32_3325  histone family protein DNA-binding protein  37.78 
 
 
90 aa  73.6  0.0000000000009  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  40 
 
 
90 aa  73.2  0.000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  40 
 
 
90 aa  73.2  0.000000000001  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_009483  Gura_1918  histone family protein DNA-binding protein  40 
 
 
91 aa  72.8  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000897645  n/a   
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  41.11 
 
 
90 aa  72.4  0.000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_014230  CA2559_09623  probable DNA-binding protein HU  41.11 
 
 
90 aa  72.4  0.000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.355669  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  40 
 
 
98 aa  72  0.000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  41.11 
 
 
90 aa  72  0.000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  43.33 
 
 
90 aa  72  0.000000000002  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  41.11 
 
 
90 aa  72.4  0.000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  42.22 
 
 
90 aa  72.4  0.000000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_011989  Avi_1701  HU-like DNA-binding protein alpha subunit  44.44 
 
 
91 aa  71.6  0.000000000003  Agrobacterium vitis S4  Bacteria  normal  0.512418  n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  41.11 
 
 
90 aa  72  0.000000000003  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_010003  Pmob_1910  histone family protein DNA-binding protein  38.2 
 
 
90 aa  71.6  0.000000000003  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000000311196  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  40 
 
 
90 aa  72  0.000000000003  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  43.33 
 
 
101 aa  71.2  0.000000000004  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  42.22 
 
 
90 aa  71.2  0.000000000004  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_013169  Ksed_26150  nucleoid DNA-binding protein  42.05 
 
 
91 aa  71.2  0.000000000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0083  DNA-binding protein HU (DNA-binding protein II)  42.7 
 
 
90 aa  71.6  0.000000000004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  39.33 
 
 
90 aa  70.9  0.000000000005  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  39.33 
 
 
90 aa  70.9  0.000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_2301  nucleoid protein Hbs  38.2 
 
 
90 aa  70.9  0.000000000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.265465  n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  41.11 
 
 
91 aa  70.5  0.000000000007  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  41.11 
 
 
90 aa  70.1  0.000000000009  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009511  Swit_0045  histone family protein DNA-binding protein  38.89 
 
 
90 aa  69.3  0.00000000001  Sphingomonas wittichii RW1  Bacteria  decreased coverage  0.00000165888  normal 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  40 
 
 
90 aa  69.7  0.00000000001  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  39.33 
 
 
91 aa  69.7  0.00000000001  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  34.44 
 
 
90 aa  70.1  0.00000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0799  histone-like DNA-binding protein  40 
 
 
90 aa  70.1  0.00000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.0173855 
 
 
-
 
NC_009972  Haur_3398  histone family protein DNA-binding protein  40 
 
 
92 aa  70.1  0.00000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000223697  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  41.11 
 
 
90 aa  69.3  0.00000000002  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  38.2 
 
 
91 aa  69.3  0.00000000002  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  41.57 
 
 
90 aa  68.9  0.00000000002  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  41.11 
 
 
90 aa  69.3  0.00000000002  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_007947  Mfla_1412  histone-like DNA-binding protein  42.7 
 
 
91 aa  68.9  0.00000000002  Methylobacillus flagellatus KT  Bacteria  unclonable  0.0000000000277772  normal 
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  40 
 
 
90 aa  69.3  0.00000000002  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  37.78 
 
 
90 aa  68.9  0.00000000002  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  40 
 
 
90 aa  68.9  0.00000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  42.86 
 
 
91 aa  68.6  0.00000000003  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_007794  Saro_1362  histone-like DNA-binding protein  37.78 
 
 
90 aa  68.6  0.00000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.102123  n/a   
 
 
-
 
NC_008825  Mpe_A1956  nucleoid protein Hbs  41.11 
 
 
90 aa  68.6  0.00000000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.582961  normal  0.45981 
 
 
-
 
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