More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_5039 on replicon NC_012855
Organism: Ralstonia pickettii 12D



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012855  Rpic12D_5039  histone family protein DNA-binding protein  100 
 
 		 94 aa  190  5e-48  Ralstonia pickettii 12D  Bacteria  normal  0.889388  normal  1 
 
 
-
 
NC_010622  Bphy_3067  histone family protein DNA-binding protein  46.15 
 
 		 92 aa  94.4  5e-19  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.0353619 
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  46.67 
 
 		 90 aa  93.6  8e-19  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008836  BMA10229_A1629  DNA-binding protein HU, form B  45.05 
 
 		 92 aa  92  2e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_2972  DNA-binding protein HU-alpha  45.05 
 
 		 92 aa  92  2e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3397  DNA-binding protein HU, form B  45.05 
 
 		 92 aa  92  2e-18  Burkholderia mallei SAVP1  Bacteria  normal  0.218557  n/a   
 
 
-
 
NC_006348  BMA2913  DNA-binding protein HU, form B  45.05 
 
 		 92 aa  92  2e-18  Burkholderia mallei ATCC 23344  Bacteria  normal  0.5361  n/a   
 
 
-
 
NC_010084  Bmul_0066  histone family protein DNA-binding protein  45.05 
 
 		 92 aa  92.4  2e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007510  Bcep18194_A3247  histone-like DNA-binding protein  45.05 
 
 		 92 aa  92.4  2e-18  Burkholderia sp. 383  Bacteria  normal  1  normal  0.704477 
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  45.56 
 
 		 90 aa  92.4  2e-18  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008060  Bcen_0005  histone-like DNA-binding protein  45.05 
 
 		 92 aa  92.4  2e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.129264  n/a   
 
 
-
 
NC_009074  BURPS668_0004  DNA-binding protein HU-alpha  45.05 
 
 		 92 aa  92  2e-18  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_009076  BURPS1106A_0004  DNA-binding protein HU-alpha  45.05 
 
 		 92 aa  92  2e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_010508  Bcenmc03_0084  histone family protein DNA-binding protein  45.05 
 
 		 92 aa  92.4  2e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010551  BamMC406_0065  histone family protein DNA-binding protein  45.05 
 
 		 92 aa  92.4  2e-18  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008390  Bamb_0055  histone family protein DNA-binding protein  45.05 
 
 		 92 aa  92.4  2e-18  Burkholderia ambifaria AMMD  Bacteria  normal  1  n/a   
 
 
-
 
NC_008542  Bcen2424_0065  histone family protein DNA-binding protein  45.05 
 
 		 92 aa  92.4  2e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  1  n/a   
 
 
-
 
NC_010681  Bphyt_3933  histone family protein DNA-binding protein  43.96 
 
 		 92 aa  91.7  3e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A4504  DNA-binding protein HU-alpha  43.96 
 
 		 92 aa  91.7  3e-18  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.806931 
 
 
-
 
NC_007651  BTH_I0004  DNA-binding protein HU-alpha  45.05 
 
 		 126 aa  90.1  9e-18  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  43.33 
 
 		 90 aa  89.7  1e-17  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_010676  Bphyt_4682  histone family protein DNA-binding protein  47.78 
 
 		 92 aa  88.6  2e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0505442  normal  1 
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  45.16 
 
 		 94 aa  89  2e-17  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_007952  Bxe_B0956  DNA-binding protein HU-alpha  47.78 
 
 		 92 aa  88.6  2e-17  Burkholderia xenovorans LB400  Bacteria  normal  0.667832  normal  1 
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  45.16 
 
 		 94 aa  89  2e-17  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  46.67 
 
 		 90 aa  88.6  3e-17  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  46.67 
 
 		 90 aa  88.6  3e-17  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  44.44 
 
 		 90 aa  88.2  3e-17  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  44.44 
 
 		 90 aa  87  8e-17  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  86.7  9e-17  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal  1 
 
 
-
 
NC_004347  SO_0548  HU family DNA-binding protein  43.33 
 
 		 90 aa  86.3  1e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008783  BARBAKC583_0550  DNA-binding protein HU-beta  46.15 
 
 		 92 aa  85.5  2e-16  Bartonella bacilliformis KC583  Bacteria  normal  0.169626  n/a   
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  43.33 
 
 		 90 aa  85.9  2e-16  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_0547  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  85.1  3e-16  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  47.78 
 
 		 90 aa  85.1  3e-16  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  47.78 
 
 		 90 aa  85.1  3e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_008322  Shewmr7_3482  histone family protein DNA-binding protein  43.33 
 
 		 90 aa  85.5  3e-16  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_2301  nucleoid protein Hbs  40.45 
 
 		 90 aa  84.3  5e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.265465  n/a   
 
 
-
 
NC_009972  Haur_3398  histone family protein DNA-binding protein  44.57 
 
 		 92 aa  84  6e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000223697  n/a   
 
 
-
 
NC_010627  Bphy_7326  histone family protein DNA-binding protein  45.56 
 
 		 92 aa  84  6e-16  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.076405 
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  44.44 
 
 		 91 aa  83.6  8e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  46.67 
 
 		 90 aa  83.2  0.000000000000001  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_009438  Sputcn32_3325  histone family protein DNA-binding protein  41.11 
 
 		 90 aa  82.8  0.000000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_3817  histone family protein DNA-binding protein  41.11 
 
 		 90 aa  82.8  0.000000000000001  Shewanella baltica OS185  Bacteria  normal  0.531766  n/a   
 
 
-
 
NC_009997  Sbal195_3943  histone family protein DNA-binding protein  41.11 
 
 		 90 aa  82.8  0.000000000000001  Shewanella baltica OS195  Bacteria  normal  0.37618  normal  1 
 
 
-
 
NC_011663  Sbal223_3761  histone family protein DNA-binding protein  41.11 
 
 		 90 aa  82.8  0.000000000000001  Shewanella baltica OS223  Bacteria  normal  1  normal  0.768478 
 
 
-
 
NC_009052  Sbal_0507  histone family protein DNA-binding protein  41.11 
 
 		 90 aa  82.8  0.000000000000001  Shewanella baltica OS155  Bacteria  normal  0.0267079  n/a   
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  42.22 
 
 		 92 aa  82.4  0.000000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_010531  Pnec_1743  histone family protein DNA-binding protein  41.94 
 
 		 106 aa  82.4  0.000000000000002  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  40 
 
 		 90 aa  81.6  0.000000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_007948  Bpro_1551  histone-like DNA-binding protein  41.11 
 
 		 103 aa  81.6  0.000000000000003  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00525571  normal  0.659297 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  46.67 
 
 		 90 aa  81.3  0.000000000000004  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  46.07 
 
 		 90 aa  80.9  0.000000000000005  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009379  Pnuc_2026  histone family protein DNA-binding protein  40.86 
 
 		 106 aa  81.3  0.000000000000005  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  decreased coverage  0.00000760647  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  46.67 
 
 		 90 aa  80.5  0.000000000000007  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  45.56 
 
 		 90 aa  80.1  0.00000000000001  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_002950  PG0121  DNA-binding protein HU  43.53 
 
 		 88 aa  79.7  0.00000000000001  Porphyromonas gingivalis W83  Bacteria  n/a    hitchhiker  0.00022412 
 
 
-
 
NC_007949  Bpro_4958  histone-like DNA-binding protein  41.11 
 
 		 103 aa  79.7  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  0.674818  normal  1 
 
 
-
 
NC_009483  Gura_1918  histone family protein DNA-binding protein  38.89 
 
 		 91 aa  79.7  0.00000000000001  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000897645  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  42.22 
 
 		 90 aa  79  0.00000000000002  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  44.44 
 
 		 101 aa  79.3  0.00000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1826  hypothetical protein  45.05 
 
 		 92 aa  79.3  0.00000000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1822  hypothetical protein  45.05 
 
 		 92 aa  79.3  0.00000000000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B4039  HU family DNA-binding protein  46.24 
 
 		 93 aa  79.3  0.00000000000002  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  46.67 
 
 		 90 aa  79.3  0.00000000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  1  normal  0.0418926 
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  39.56 
 
 		 91 aa  79.3  0.00000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  44.44 
 
 		 90 aa  79  0.00000000000002  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007974  Rmet_4749  histone-like DNA-binding protein  46.24 
 
 		 93 aa  79.3  0.00000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.188687 
 
 
-
 
NC_010003  Pmob_1910  histone family protein DNA-binding protein  38.89 
 
 		 90 aa  79.3  0.00000000000002  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000000311196  n/a   
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  41.3 
 
 		 92 aa  79  0.00000000000002  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_011831  Cagg_2800  histone family protein DNA-binding protein  42.22 
 
 		 91 aa  78.6  0.00000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0357703  normal  0.314241 
 
 
-
 
NC_013530  Xcel_3268  histone family protein DNA-binding protein  42.22 
 
 		 93 aa  78.2  0.00000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  40 
 
 		 90 aa  78.6  0.00000000000003  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  42.22 
 
 		 91 aa  78.2  0.00000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  46.67 
 
 		 90 aa  78.2  0.00000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  40 
 
 		 90 aa  78.6  0.00000000000003  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  44.44 
 
 		 90 aa  78.2  0.00000000000003  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_008576  Mmc1_2903  histone family protein DNA-binding protein  40 
 
 		 91 aa  78.2  0.00000000000004  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00933352  normal  0.626047 
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  39.56 
 
 		 91 aa  78.2  0.00000000000004  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_009523  RoseRS_4008  histone family protein DNA-binding protein  43.33 
 
 		 92 aa  78.2  0.00000000000004  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.0000735771  normal  1 
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  38.89 
 
 		 92 aa  78.2  0.00000000000004  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  41.11 
 
 		 90 aa  78.2  0.00000000000004  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_008576  Mmc1_1118  HU family DNA-binding protein  43.33 
 
 		 91 aa  78.2  0.00000000000004  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00000128568  normal  1 
 
 
-
 
NC_008576  Mmc1_1251  histone family protein DNA-binding protein  40 
 
 		 91 aa  78.2  0.00000000000004  Magnetococcus sp. MC-1  Bacteria  normal  0.0902596  normal  0.20081 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  44.44 
 
 		 90 aa  77.8  0.00000000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  40.66 
 
 		 93 aa  77.8  0.00000000000005  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_011365  Gdia_3327  histone family protein DNA-binding protein  40 
 
 		 94 aa  77.4  0.00000000000006  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.372094  normal  0.0697763 
 
 
-
 
NC_007404  Tbd_0007  histone-like DNA-binding protein  48.19 
 
 		 98 aa  77.4  0.00000000000006  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  41.57 
 
 		 90 aa  77  0.00000000000007  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  43.33 
 
 		 90 aa  77  0.00000000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_3758  histone family protein DNA-binding protein  43.82 
 
 		 90 aa  77  0.00000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  0.639339  n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal  1 
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  42.22 
 
 		 90 aa  77  0.00000000000008  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
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