More than 300 homologs were found in PanDaTox collection
for query gene SO_0548 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_0548  HU family DNA-binding protein  100 
 
 
90 aa  178  2e-44  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_0547  histone family protein DNA-binding protein  97.78 
 
 
90 aa  175  2e-43  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  96.67 
 
 
90 aa  174  4e-43  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3482  histone family protein DNA-binding protein  95.56 
 
 
90 aa  172  9.999999999999999e-43  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3943  histone family protein DNA-binding protein  94.44 
 
 
90 aa  171  2.9999999999999996e-42  Shewanella baltica OS195  Bacteria  normal  0.37618  normal 
 
 
-
 
NC_009665  Shew185_3817  histone family protein DNA-binding protein  94.44 
 
 
90 aa  171  2.9999999999999996e-42  Shewanella baltica OS185  Bacteria  normal  0.531766  n/a   
 
 
-
 
NC_011663  Sbal223_3761  histone family protein DNA-binding protein  94.44 
 
 
90 aa  171  2.9999999999999996e-42  Shewanella baltica OS223  Bacteria  normal  normal  0.768478 
 
 
-
 
NC_009052  Sbal_0507  histone family protein DNA-binding protein  94.44 
 
 
90 aa  171  2.9999999999999996e-42  Shewanella baltica OS155  Bacteria  normal  0.0267079  n/a   
 
 
-
 
NC_009438  Sputcn32_3325  histone family protein DNA-binding protein  94.44 
 
 
90 aa  171  2.9999999999999996e-42  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  88.89 
 
 
90 aa  164  4e-40  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  87.78 
 
 
90 aa  161  4.0000000000000004e-39  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  84.44 
 
 
90 aa  157  4e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  82.22 
 
 
90 aa  155  1e-37  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  82.22 
 
 
90 aa  153  6e-37  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  81.11 
 
 
90 aa  152  2e-36  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  81.11 
 
 
90 aa  150  5e-36  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  70 
 
 
90 aa  130  3.9999999999999996e-30  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  70 
 
 
91 aa  130  6.999999999999999e-30  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  4.0000000000000003e-29  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  67.78 
 
 
90 aa  127  4.0000000000000003e-29  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  68.89 
 
 
90 aa  127  5.0000000000000004e-29  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  67.78 
 
 
90 aa  127  7.000000000000001e-29  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  67.78 
 
 
90 aa  126  8.000000000000001e-29  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  66.67 
 
 
90 aa  124  3e-28  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  66.67 
 
 
90 aa  124  5e-28  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  62.22 
 
 
90 aa  123  8.000000000000001e-28  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  62.22 
 
 
90 aa  123  9e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  60 
 
 
90 aa  119  9.999999999999999e-27  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  63.33 
 
 
90 aa  119  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  117  6e-26  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  117  7e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  117  7e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  60 
 
 
91 aa  116  7.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  60 
 
 
90 aa  116  9e-26  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  61.11 
 
 
91 aa  116  9.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  61.11 
 
 
101 aa  116  9.999999999999999e-26  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  61.11 
 
 
90 aa  116  9.999999999999999e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  60 
 
 
90 aa  113  7.999999999999999e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  58.89 
 
 
90 aa  113  7.999999999999999e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  60 
 
 
90 aa  113  7.999999999999999e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  60 
 
 
90 aa  113  7.999999999999999e-25  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009436  Ent638_0213  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  112  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  hitchhiker  0.00855152  normal  0.0112419 
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  112  2.0000000000000002e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  56.18 
 
 
94 aa  112  2.0000000000000002e-24  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  112  2.0000000000000002e-24  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  58.89 
 
 
90 aa  112  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  60 
 
 
90 aa  112  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  112  2.0000000000000002e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
CP001509  ECD_03877  HU, DNA-binding transcriptional regulator, alpha subunit  61.8 
 
 
90 aa  111  3e-24  Escherichia coli BL21(DE3)  Bacteria  normal  0.380115  n/a   
 
 
-
 
CP001637  EcDH1_3994  histone family protein DNA-binding protein  61.8 
 
 
90 aa  111  3e-24  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  56.18 
 
 
94 aa  111  3e-24  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_010658  SbBS512_E4491  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  111  3e-24  Shigella boydii CDC 3083-94  Bacteria  normal  0.0852675  n/a   
 
 
-
 
NC_010498  EcSMS35_4448  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  111  3e-24  Escherichia coli SMS-3-5  Bacteria  normal  0.302586  hitchhiker  0.00101008 
 
 
-
 
NC_010468  EcolC_4025  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  111  3e-24  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0158227 
 
 
-
 
NC_009800  EcHS_A4234  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  111  3e-24  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4543  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  111  3e-24  Escherichia coli E24377A  Bacteria  normal  0.440082  n/a   
 
 
-
 
NC_011353  ECH74115_5469  transcriptional regulator HU subunit alpha  61.8 
 
 
90 aa  111  3e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.129609  normal 
 
 
-
 
NC_012892  B21_03830  hypothetical protein  61.8 
 
 
90 aa  111  3e-24  Escherichia coli BL21  Bacteria  normal  0.485291  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  56.67 
 
 
98 aa  111  4.0000000000000004e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  57.78 
 
 
92 aa  111  4.0000000000000004e-24  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  55.56 
 
 
90 aa  111  4.0000000000000004e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_010159  YpAngola_A0462  transcriptional regulator HU subunit alpha  60.67 
 
 
91 aa  110  5e-24  Yersinia pestis Angola  Bacteria  normal  0.082883  hitchhiker  0.00197429 
 
 
-
 
NC_010465  YPK_0354  transcriptional regulator HU subunit alpha  60.67 
 
 
91 aa  110  5e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.224811  n/a   
 
 
-
 
NC_009708  YpsIP31758_3846  transcriptional regulator HU subunit alpha  60.67 
 
 
91 aa  110  5e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.219693  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  56.67 
 
 
90 aa  110  5e-24  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  57.78 
 
 
90 aa  110  5e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  57.78 
 
 
91 aa  110  6e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  60 
 
 
90 aa  110  6e-24  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_011094  SeSA_A4381  transcriptional regulator HU subunit alpha  60.67 
 
 
90 aa  110  7.000000000000001e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.842423 
 
 
-
 
NC_011083  SeHA_C4501  transcriptional regulator HU subunit alpha  60.67 
 
 
90 aa  110  7.000000000000001e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.358882  normal  0.0495174 
 
 
-
 
NC_011080  SNSL254_A4503  transcriptional regulator HU subunit alpha  60.67 
 
 
90 aa  110  7.000000000000001e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0164141 
 
 
-
 
NC_011149  SeAg_B4414  transcriptional regulator HU subunit alpha  60.67 
 
 
90 aa  110  7.000000000000001e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.18011  n/a   
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  56.67 
 
 
90 aa  110  7.000000000000001e-24  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4577  transcriptional regulator HU subunit alpha  60.67 
 
 
90 aa  110  7.000000000000001e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.511964 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  55.56 
 
 
92 aa  110  9e-24  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_012880  Dd703_3710  transcriptional regulator HU subunit alpha  60.67 
 
 
90 aa  110  9e-24  Dickeya dadantii Ech703  Bacteria  normal  0.273113  n/a   
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  57.3 
 
 
90 aa  110  9e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  58.89 
 
 
94 aa  109  1.0000000000000001e-23  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  58.89 
 
 
94 aa  109  1.0000000000000001e-23  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  57.3 
 
 
96 aa  109  1.0000000000000001e-23  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
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