36 homologs were found in PanDaTox collection
for query gene Bcenmc03_5133 on replicon NC_010515
Organism: Burkholderia cenocepacia MC0-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010515  Bcenmc03_5133  XRE family transcriptional regulator  100 
 
 
111 aa  216  7.999999999999999e-56  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.93216  normal  0.775541 
 
 
-
 
NC_008391  Bamb_4541  XRE family transcriptional regulator  81.98 
 
 
108 aa  137  4.999999999999999e-32  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1067  XRE family transcriptional regulator  75.34 
 
 
86 aa  105  2e-22  Burkholderia phymatum STM815  Bacteria  normal  normal  0.753603 
 
 
-
 
NC_012792  Vapar_5937  transcriptional regulator, XRE family  55.7 
 
 
108 aa  75.9  0.0000000000002  Variovorax paradoxus S110  Bacteria  normal  0.496478  n/a   
 
 
-
 
NC_010002  Daci_0283  XRE family transcriptional regulator  50.6 
 
 
99 aa  75.1  0.0000000000003  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C5997  helix-hairpin-helix DNA-binding motif-containing protein  48 
 
 
104 aa  63.5  0.000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6167  helix-hairpin-helix DNA-binding motif-containing protein  50 
 
 
89 aa  60.1  0.00000001  Ralstonia eutropha JMP134  Bacteria  normal  0.689241  n/a   
 
 
-
 
NC_010086  Bmul_4713  hypothetical protein  45.16 
 
 
270 aa  52.4  0.000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1911  putative transcription regulator protein  43.94 
 
 
112 aa  51.6  0.000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3396  XRE family transcriptional regulator  36.23 
 
 
97 aa  51.6  0.000003  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00158475 
 
 
-
 
NC_006368  lpp1916  hypothetical protein  31.08 
 
 
93 aa  51.6  0.000004  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0478  XRE family transcriptional regulator  38.24 
 
 
78 aa  51.2  0.000004  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0705  Cro/CI family transcriptional regulator  34.78 
 
 
97 aa  49.7  0.00001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0669  transcriptional regulator, XRE family  34.78 
 
 
78 aa  50.1  0.00001  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0677  XRE family transcriptional regulator  34.78 
 
 
78 aa  49.7  0.00001  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0649  XRE family transcriptional regulator  34.78 
 
 
78 aa  49.7  0.00001  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0557  XRE family transcriptional regulator  34.78 
 
 
78 aa  50.1  0.00001  Shewanella sp. MR-7  Bacteria  normal  normal  0.948289 
 
 
-
 
NC_007954  Sden_0427  transciptional regulator  35.29 
 
 
82 aa  47.8  0.00006  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1094  hypothetical protein  41.27 
 
 
84 aa  46.6  0.0001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0376  XRE family transcriptional regulator  37.1 
 
 
82 aa  45.4  0.0002  Shewanella sediminis HAW-EB3  Bacteria  normal  unclonable  0.0000000000453716 
 
 
-
 
NC_009511  Swit_1430  XRE family transcriptional regulator  31.03 
 
 
259 aa  45.4  0.0002  Sphingomonas wittichii RW1  Bacteria  normal  hitchhiker  0.00776927 
 
 
-
 
NC_006369  lpl1905  hypothetical protein  30.16 
 
 
75 aa  45.4  0.0003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_3656  transcriptional regulator, XRE family protein  36.07 
 
 
78 aa  45.1  0.0003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2661  putative transcription regulator protein  37.93 
 
 
111 aa  45.1  0.0004  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.574569 
 
 
-
 
NC_011071  Smal_0140  helix-turn-helix domain protein  42.37 
 
 
87 aa  45.1  0.0004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.7168 
 
 
-
 
NC_010087  Bmul_5392  helix-turn-helix domain-containing protein  36.21 
 
 
183 aa  43.9  0.0008  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.471231  normal  0.0187132 
 
 
-
 
NC_009997  Sbal195_3380  XRE family transcriptional regulator  31.11 
 
 
115 aa  43.5  0.0009  Shewanella baltica OS195  Bacteria  normal  0.738813  hitchhiker  0.00256975 
 
 
-
 
NC_012560  Avin_30630  transcription regulator protein  36.21 
 
 
122 aa  43.5  0.001  Azotobacter vinelandii DJ  Bacteria  normal  0.635425  n/a   
 
 
-
 
NC_009665  Shew185_1872  XRE family transcriptional regulator  30.77 
 
 
115 aa  42  0.003  Shewanella baltica OS185  Bacteria  normal  0.765913  n/a   
 
 
-
 
NC_008781  Pnap_0377  XRE family transcriptional regulator  34.62 
 
 
164 aa  41.6  0.004  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.817561  normal  0.780883 
 
 
-
 
NC_009665  Shew185_3350  XRE family transcriptional regulator  30.77 
 
 
115 aa  41.2  0.004  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3247  XRE family transcriptional regulator  30.77 
 
 
115 aa  41.2  0.004  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4570  XRE family transcriptional regulator  35 
 
 
82 aa  40.8  0.006  Shewanella woodyi ATCC 51908  Bacteria  normal  unclonable  0.000000015798 
 
 
-
 
NC_009997  Sbal195_3478  XRE family transcriptional regulator  27.14 
 
 
115 aa  40.8  0.007  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.0022624 
 
 
-
 
NC_010506  Swoo_4574  XRE family transcriptional regulator  30.3 
 
 
103 aa  40.4  0.009  Shewanella woodyi ATCC 51908  Bacteria  normal  unclonable  0.0000000193925 
 
 
-
 
NC_010814  Glov_0168  transcriptional regulator, XRE family  36.07 
 
 
86 aa  40  0.01  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
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