More than 300 homologs were found in PanDaTox collection
for query gene Smed_5117 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009621  Smed_5117  methyl-accepting chemotaxis sensory transducer  100 
 
 
545 aa  1069    Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0275586 
 
 
-
 
NC_008254  Meso_0599  methyl-accepting chemotaxis sensory transducer  58.36 
 
 
539 aa  541  1e-153  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1194  methyl-accepting chemotaxis sensory transducer  40.92 
 
 
547 aa  268  2e-70  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.705182  n/a   
 
 
-
 
NC_011145  AnaeK_2677  methyl-accepting chemotaxis sensory transducer  40.7 
 
 
547 aa  266  5e-70  Anaeromyxobacter sp. K  Bacteria  normal  0.0498227  n/a   
 
 
-
 
NC_011891  A2cp1_2772  methyl-accepting chemotaxis sensory transducer  40.7 
 
 
547 aa  265  2e-69  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0543063  n/a   
 
 
-
 
NC_009675  Anae109_2296  methyl-accepting chemotaxis sensory transducer  34.63 
 
 
544 aa  236  6e-61  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.786349  normal 
 
 
-
 
NC_007517  Gmet_2709  methyl-accepting chemotaxis sensory transducer  41.23 
 
 
537 aa  219  8.999999999999998e-56  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3254  methyl-accepting chemotaxis sensory transducer  38.58 
 
 
612 aa  218  2e-55  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0159313  normal  0.0166963 
 
 
-
 
NC_009767  Rcas_3434  methyl-accepting chemotaxis sensory transducer  41.59 
 
 
750 aa  214  2.9999999999999995e-54  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.364699  normal  0.15182 
 
 
-
 
NC_012918  GM21_2191  methyl-accepting chemotaxis sensory transducer  39.04 
 
 
618 aa  208  2e-52  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2028  methyl-accepting chemotaxis sensory transducer  39.04 
 
 
626 aa  208  3e-52  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1328  methyl-accepting chemotaxis sensory transducer  35.59 
 
 
543 aa  207  4e-52  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007948  Bpro_2463  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
512 aa  206  1e-51  Polaromonas sp. JS666  Bacteria  normal  0.735637  normal  0.0793518 
 
 
-
 
NC_007948  Bpro_2464  methyl-accepting chemotaxis sensory transducer  39.95 
 
 
576 aa  206  1e-51  Polaromonas sp. JS666  Bacteria  normal  0.681434  normal  0.078155 
 
 
-
 
NC_007948  Bpro_2465  methyl-accepting chemotaxis sensory transducer  41 
 
 
555 aa  199  1.0000000000000001e-49  Polaromonas sp. JS666  Bacteria  normal  0.834372  normal  0.0349736 
 
 
-
 
NC_009523  RoseRS_1510  methyl-accepting chemotaxis sensory transducer  41.59 
 
 
751 aa  196  1e-48  Roseiflexus sp. RS-1  Bacteria  normal  0.795012  normal  0.0658131 
 
 
-
 
NC_007796  Mhun_0990  methyl-accepting chemotaxis sensory transducer  42.59 
 
 
824 aa  195  2e-48  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.256608 
 
 
-
 
NC_007614  Nmul_A0332  methyl-accepting chemotaxis sensory transducer  45.28 
 
 
497 aa  194  3e-48  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3201  methyl-accepting chemotaxis sensory transducer  42.12 
 
 
608 aa  189  1e-46  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.608915 
 
 
-
 
NC_009523  RoseRS_0999  methyl-accepting chemotaxis sensory transducer  42.99 
 
 
625 aa  188  3e-46  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1833  methyl-accepting chemotaxis sensory transducer  35.91 
 
 
515 aa  182  2e-44  Magnetococcus sp. MC-1  Bacteria  normal  0.239593  normal 
 
 
-
 
NC_012918  GM21_1837  methyl-accepting chemotaxis sensory transducer  31.22 
 
 
578 aa  171  4e-41  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00718884 
 
 
-
 
NC_008578  Acel_1872  methyl-accepting chemotaxis sensory transducer  37.66 
 
 
555 aa  171  4e-41  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2381  methyl-accepting chemotaxis sensory transducer  31.12 
 
 
578 aa  170  5e-41  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2399  methyl-accepting chemotaxis sensory transducer  36.5 
 
 
392 aa  166  8e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.17157  normal 
 
 
-
 
NC_007796  Mhun_0495  methyl-accepting chemotaxis sensory transducer  36.5 
 
 
795 aa  165  2.0000000000000002e-39  Methanospirillum hungatei JF-1  Archaea  normal  0.132321  normal 
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  34.75 
 
 
543 aa  164  3e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_0239  methyl-accepting chemotaxis sensory transducer  37.26 
 
 
793 aa  161  2e-38  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009483  Gura_4170  methyl-accepting chemotaxis sensory transducer  32.96 
 
 
578 aa  161  3e-38  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00480  methyl-accepting chemotaxis sensory transducer  30.42 
 
 
676 aa  160  4e-38  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1221  methyl-accepting chemotaxis sensory transducer  35.2 
 
 
564 aa  159  1e-37  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000139892  n/a   
 
 
-
 
NC_010505  Mrad2831_3016  methyl-accepting chemotaxis sensory transducer  35.36 
 
 
539 aa  156  8e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.296337  normal  0.408298 
 
 
-
 
NC_009675  Anae109_3536  methyl-accepting chemotaxis sensory transducer  35.22 
 
 
414 aa  156  9e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0382594 
 
 
-
 
NC_009483  Gura_0960  methyl-accepting chemotaxis sensory transducer  30.15 
 
 
666 aa  152  2e-35  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000181378  n/a   
 
 
-
 
NC_011830  Dhaf_3311  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.8 
 
 
695 aa  151  3e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0266885  n/a   
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  31.07 
 
 
549 aa  150  4e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4205  methyl-accepting chemotaxis sensory transducer  35.84 
 
 
513 aa  150  7e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0616634  normal  0.221453 
 
 
-
 
NC_011365  Gdia_3077  methyl-accepting chemotaxis sensory transducer  34.93 
 
 
560 aa  149  2.0000000000000003e-34  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  hitchhiker  0.00601678 
 
 
-
 
NC_009523  RoseRS_0037  methyl-accepting chemotaxis sensory transducer  35.97 
 
 
501 aa  149  2.0000000000000003e-34  Roseiflexus sp. RS-1  Bacteria  normal  0.603836  normal  0.831641 
 
 
-
 
NC_010725  Mpop_1357  methyl-accepting chemotaxis sensory transducer  35.03 
 
 
539 aa  148  2.0000000000000003e-34  Methylobacterium populi BJ001  Bacteria  normal  0.977036  normal  0.0183554 
 
 
-
 
NC_012918  GM21_3345  methyl-accepting chemotaxis sensory transducer  31.84 
 
 
542 aa  148  3e-34  Geobacter sp. M21  Bacteria  n/a    normal  0.0226154 
 
 
-
 
NC_010511  M446_0243  methyl-accepting chemotaxis sensory transducer  32.37 
 
 
561 aa  147  4.0000000000000006e-34  Methylobacterium sp. 4-46  Bacteria  normal  0.223265  normal  0.0115884 
 
 
-
 
NC_009483  Gura_0476  methyl-accepting chemotaxis sensory transducer  32.22 
 
 
830 aa  147  6e-34  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2857  methyl-accepting chemotaxis sensory transducer  36.7 
 
 
674 aa  146  7.0000000000000006e-34  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.0000256668  n/a   
 
 
-
 
NC_013161  Cyan8802_0789  methyl-accepting chemotaxis sensory transducer  32.12 
 
 
457 aa  146  1e-33  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3964  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
535 aa  145  1e-33  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000408371 
 
 
-
 
NC_011830  Dhaf_2112  methyl-accepting chemotaxis sensory transducer  31.98 
 
 
571 aa  145  1e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0763  methyl-accepting chemotaxis sensory transducer  32.12 
 
 
457 aa  146  1e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_3063  methyl-accepting chemotaxis sensory transducer  31.02 
 
 
533 aa  145  2e-33  Geobacter uraniireducens Rf4  Bacteria  normal  0.378908  n/a   
 
 
-
 
NC_007492  Pfl01_5305  chemotaxis sensory transducer  31.67 
 
 
686 aa  145  2e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.115158  normal  0.281343 
 
 
-
 
NC_009483  Gura_3311  methyl-accepting chemotaxis sensory transducer  28.99 
 
 
547 aa  145  2e-33  Geobacter uraniireducens Rf4  Bacteria  normal  0.691655  n/a   
 
 
-
 
NC_011894  Mnod_5452  methyl-accepting chemotaxis sensory transducer  32.42 
 
 
558 aa  144  3e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.397203  n/a   
 
 
-
 
NC_011830  Dhaf_1373  methyl-accepting chemotaxis sensory transducer  31.34 
 
 
571 aa  144  3e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0762  methyl-accepting chemotaxis sensory transducer  33.21 
 
 
484 aa  144  4e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0788  methyl-accepting chemotaxis sensory transducer  33.21 
 
 
484 aa  144  4e-33  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1610  methyl-accepting chemotaxis sensory transducer  32.63 
 
 
572 aa  143  6e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0355909  n/a   
 
 
-
 
NC_011146  Gbem_3876  methyl-accepting chemotaxis sensory transducer  32.74 
 
 
535 aa  143  7e-33  Geobacter bemidjiensis Bem  Bacteria  normal  0.74566  n/a   
 
 
-
 
NC_007517  Gmet_2828  methyl-accepting chemotaxis sensory transducer  30.04 
 
 
550 aa  143  8e-33  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000014913 
 
 
-
 
NC_010814  Glov_1286  methyl-accepting chemotaxis sensory transducer  31.95 
 
 
538 aa  142  9.999999999999999e-33  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2956  methyl-accepting chemotaxis sensory transducer  34.96 
 
 
561 aa  142  9.999999999999999e-33  Methylobacterium populi BJ001  Bacteria  normal  0.859245  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  31.36 
 
 
636 aa  141  3e-32  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_010483  TRQ2_1321  methyl-accepting chemotaxis sensory transducer  30.28 
 
 
566 aa  141  3e-32  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.00082247  n/a   
 
 
-
 
NC_010814  Glov_0889  methyl-accepting chemotaxis sensory transducer  31.16 
 
 
540 aa  140  3.9999999999999997e-32  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1365  methyl-accepting chemotaxis sensory transducer  30.56 
 
 
566 aa  140  4.999999999999999e-32  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2760  methyl-accepting chemotaxis sensory transducer  29.49 
 
 
639 aa  140  6e-32  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3631  putative methyl-accepting chemotaxis sensory transducer  31.64 
 
 
731 aa  140  6e-32  Saccharophagus degradans 2-40  Bacteria  normal  0.455048  normal 
 
 
-
 
NC_008340  Mlg_0358  methyl-accepting chemotaxis sensory transducer  32.35 
 
 
560 aa  140  6e-32  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0237962  normal  0.734928 
 
 
-
 
NC_013501  Rmar_2177  methyl-accepting chemotaxis sensory transducer  33.14 
 
 
628 aa  140  7.999999999999999e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  28.64 
 
 
549 aa  139  8.999999999999999e-32  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  31.41 
 
 
646 aa  139  8.999999999999999e-32  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_011830  Dhaf_0079  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.03 
 
 
588 aa  139  2e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.031352  n/a   
 
 
-
 
NC_009439  Pmen_0406  methyl-accepting chemotaxis sensory transducer  31.4 
 
 
678 aa  138  2e-31  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_0142  methyl-accepting chemotaxis sensory transducer  33.45 
 
 
540 aa  139  2e-31  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0808523  n/a   
 
 
-
 
NC_002939  GSU1029  methyl-accepting chemotaxis protein  33.74 
 
 
549 aa  138  3.0000000000000003e-31  Geobacter sulfurreducens PCA  Bacteria  normal  0.392996  n/a   
 
 
-
 
NC_010814  Glov_2890  methyl-accepting chemotaxis sensory transducer  32.27 
 
 
549 aa  138  3.0000000000000003e-31  Geobacter lovleyi SZ  Bacteria  normal  0.824592  n/a   
 
 
-
 
NC_007519  Dde_3295  methyl-accepting chemotaxis sensory transducer  31.81 
 
 
720 aa  138  3.0000000000000003e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.0000403269  n/a   
 
 
-
 
NC_009075  BURPS668_A1710  methyl-accepting chemotaxis protein  32.31 
 
 
517 aa  137  5e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1623  methyl-accepting chemotaxis protein  32.31 
 
 
517 aa  137  5e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1032  methyl-accepting chemotaxis protein  32.04 
 
 
645 aa  137  6.0000000000000005e-31  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0212  methyl-accepting chemotaxis protein  32.31 
 
 
464 aa  137  6.0000000000000005e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  0.387539  n/a   
 
 
-
 
NC_008751  Dvul_2346  methyl-accepting chemotaxis sensory transducer  28.18 
 
 
677 aa  137  6.0000000000000005e-31  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.0173542 
 
 
-
 
NC_013889  TK90_2397  methyl-accepting chemotaxis sensory transducer  33.13 
 
 
686 aa  137  7.000000000000001e-31  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.688228 
 
 
-
 
NC_004578  PSPTO_5031  type IV pilus biogenesis protein PilJ  32.16 
 
 
680 aa  137  7.000000000000001e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0367  methyl-accepting chemotaxis sensory transducer  29.66 
 
 
580 aa  136  8e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0712  methyl-accepting chemotaxis sensory transducer  33.02 
 
 
550 aa  136  8e-31  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  30.66 
 
 
546 aa  136  9.999999999999999e-31  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_010814  Glov_0149  methyl-accepting chemotaxis sensory transducer  30.77 
 
 
533 aa  136  9.999999999999999e-31  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  32.5 
 
 
637 aa  135  9.999999999999999e-31  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  30.19 
 
 
651 aa  135  1.9999999999999998e-30  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_010717  PXO_01605  pilus biogenesis protein  27.92 
 
 
678 aa  135  1.9999999999999998e-30  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.128934  n/a   
 
 
-
 
NC_010505  Mrad2831_2185  methyl-accepting chemotaxis sensory transducer  31.74 
 
 
557 aa  135  1.9999999999999998e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_4401  methyl-accepting chemotaxis sensory transducer  28.03 
 
 
695 aa  135  1.9999999999999998e-30  Geobacter uraniireducens Rf4  Bacteria  normal  0.896591  n/a   
 
 
-
 
NC_007517  Gmet_2825  methyl-accepting chemotaxis sensory transducer  31.18 
 
 
570 aa  135  1.9999999999999998e-30  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000443347 
 
 
-
 
NC_007519  Dde_2968  methyl-accepting chemotaxis sensory transducer  28.53 
 
 
673 aa  135  1.9999999999999998e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.000001862  n/a   
 
 
-
 
NC_010501  PputW619_0475  methyl-accepting chemotaxis sensory transducer  32.85 
 
 
686 aa  135  1.9999999999999998e-30  Pseudomonas putida W619  Bacteria  normal  0.178091  normal 
 
 
-
 
NC_012034  Athe_2304  methyl-accepting chemotaxis sensory transducer  30.47 
 
 
713 aa  135  1.9999999999999998e-30  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0160  methyl-accepting chemotaxis sensory transducer  28.57 
 
 
513 aa  135  1.9999999999999998e-30  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3924  methyl-accepting chemotaxis sensory transducer  28.97 
 
 
527 aa  135  1.9999999999999998e-30  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0750  methyl-accepting chemotaxis protein, putative  30.81 
 
 
539 aa  134  3e-30  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4233  methyl-accepting chemotaxis sensory transducer  29.07 
 
 
525 aa  134  3e-30  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000524679 
 
 
-
 
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