| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0406 |
|---|
| Symbol | |
|---|
| ID | 5108328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 420444 |
|---|
| End bp | 422480 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640501622 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001185911 |
|---|
| Protein GI | 146305446 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TCAATGCAGG CAATTTGTTG GCGGGGGCAC GCAGCAGTAC GCTGATCACA
GCGCTGTTCG TCGTGCTCAT CGTGTCCATC GTGCTGTTGT TCGCGAACTT CGCCTACATC
AACACCCAGT CCGGCTACGA TACCGAGTAC ATCAGCCACT CCGGTGAGCT GCGCGTACTG
TCCCAGCGGA TCGCCAACAA CGCCACTGAG GCTGCGGCGG GCAAGGCAGA GGCATTCGGC
CTGCTGCGTG CTGCGCGTAA CGACTTCCAG CGGCGCTGGA GTTACCTGAC CGACGGTGAT
GCCAATACCG GCCTGCCTCC GGCACCTTCT TCGGTGCAAG CGCAGATGGC TGCGGTGCAG
CAGGACTGGG ACAGCCTGCG GCAGAACACC GACGCCATTA TTGCCAGTGA GCAGACCGTA
CTGTCGCTGC ACCAGGTAGC CGCCACCCTG GCGGAAACCA TTCCGCAATT GCAGGTCGAG
TACGAGGAAG TGGTCGACAT CCTGCTGGAA AGCGGTGCGC CGGCTGCCCA GGTCTCTGTG
GCCCAGCGTC AGTCGCTGCT GGCCGAGCGT ATTCTCGGCT CGGTGAACAA GGTGCTGGCC
GGTGACGAAG ATTCGGTACA GGCCGCCGAC ATGTTCGGTC GTGATGCCAG CCTGTTCGGT
CGCGTACTGG CCGCCATGCT CGAAGGCAAC GCGGCGATGG AAATCAGCCA GGTGACCGAC
GAGGAGGCCC TCGAGCGTCT GGCCGAGATT TCCGAGCTGT TCGAATTCGT ATCCGGTTCG
GTGGACGAGA TTCTCGAGAC CTCGCCGGAA CTGTTCCAGG TTCGTGAGTC GGCCAACTCC
ATCTTCACCG TGTCGCAGAC CTTGCTGGAT AAAGCCTCCG AGCTGGCTGC CGGCTTCGAA
GACCTGGCTG ACGGCCGTGC CATCAACACC CTGTTCGGCT ACGTGCTGGG TGGTCTGGCG
CTGGGTTCGA TCATCCTCAT CGGTCTGGTG ATGGTGCGTG AGACCAACCG TCGTCTGGCC
GAGACCGCCG AGAAGAACGA ACGTAACCAG GCGGCGATTC TGCGTCTGCT CGATGAAATC
GCCGACCTCG CCGACGGTGA CCTGACCGTG GCCGCGACGG TAACCGAAGA CTTCACCGGT
GCCATCGCCG ACTCCATCAA CTACTCCATC GACCAGCTGC GCGACCTGGT AGCCACCATC
AACCTGACCG CCGTTCAGGT AGCCGGTGCG GCCCAGGAAA CCCAGGCCAC GGCGATGCAC
CTGGCGGAAG CGTCCGAGCA CCAGGCGCAG GAAATTGCCG GTGCCTCCGC GGCGATCAAC
GAAATGGCCG TGTCGATTGA CCAGGTATCG GCGAACGCCA GCGAATCGTC CGCGGTAGCG
GAACGTTCCG TAGCCATCGC CAACAAGGGC AACGAAGTCG TACACAACAC CATCACCGGC
ATGGATAACA TCCGTGAGCA GATCCAGGAC ACCTCGAAGC GAATCAAACG CCTCGGTGAA
TCGTCCCAGG AGATCGGTGA CATCGTTAGC CTGATTAACG ACATTGCCGA CCAGACCAAC
ATCCTTGCAC TGAACGCCGC GATCCAGGCG TCGATGGCCG GTGATGCCGG TCGCGGCTTC
GCCGTGGTAG CGGACGAGGT ACAACGCCTC GCAGAACGTT CCTCGGCGGC GACCAAGCAG
ATCGAGGCGC TGGTAAAAAC CATTCAGACC GACACCAACG AAGCCGTTAT CTCCATGGAG
CAGACGACTT CCGAAGTGGT GCGCGGTGCC CGCCTGGCGC AGGACGCCGG GGTGGCCCTG
GAAGAGATCG AGAAGGTATC GAAAACCCTC GCGGCCCTCA TCCAGAACAT TTCCAACGCC
GCGCGTCAGC AGGCCTCTTC GGCCGGCCAC ATTTCCAACA CCATGAACGT GATCCAGGAG
ATCACCTCGC AGACGTCCTC GGGTACCACC GCCACCGCCA AGAGCATTGG TAACCTGGCC
AAGATGGCCA GTGAGATGCG CAAGTCGGTA TCCGGTTTCA CCCTGCCAGA CGCCTGA
|
|---|
| Protein sequence | MKKLNAGNLL AGARSSTLIT ALFVVLIVSI VLLFANFAYI NTQSGYDTEY ISHSGELRVL
SQRIANNATE AAAGKAEAFG LLRAARNDFQ RRWSYLTDGD ANTGLPPAPS SVQAQMAAVQ
QDWDSLRQNT DAIIASEQTV LSLHQVAATL AETIPQLQVE YEEVVDILLE SGAPAAQVSV
AQRQSLLAER ILGSVNKVLA GDEDSVQAAD MFGRDASLFG RVLAAMLEGN AAMEISQVTD
EEALERLAEI SELFEFVSGS VDEILETSPE LFQVRESANS IFTVSQTLLD KASELAAGFE
DLADGRAINT LFGYVLGGLA LGSIILIGLV MVRETNRRLA ETAEKNERNQ AAILRLLDEI
ADLADGDLTV AATVTEDFTG AIADSINYSI DQLRDLVATI NLTAVQVAGA AQETQATAMH
LAEASEHQAQ EIAGASAAIN EMAVSIDQVS ANASESSAVA ERSVAIANKG NEVVHNTITG
MDNIREQIQD TSKRIKRLGE SSQEIGDIVS LINDIADQTN ILALNAAIQA SMAGDAGRGF
AVVADEVQRL AERSSAATKQ IEALVKTIQT DTNEAVISME QTTSEVVRGA RLAQDAGVAL
EEIEKVSKTL AALIQNISNA ARQQASSAGH ISNTMNVIQE ITSQTSSGTT ATAKSIGNLA
KMASEMRKSV SGFTLPDA
|
|---|
| |