20 homologs were found in PanDaTox collection
for query gene Lcho_0867 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010524  Lcho_0867  type IV secretion system family protein  100 
 
 		 238 aa  483  1e-135  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007953  Bxe_C0452  putative type IV secretion system protein VirB5/TraF  35.81 
 
 		 235 aa  139  3.9999999999999997e-32  Burkholderia xenovorans LB400  Bacteria  normal  0.385252  normal  1 
 
 
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NC_010681  Bphyt_0165  P-type DNA transfer protein VirB5  36.45 
 
 		 236 aa  135  4e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.572956 
 
 
-
 
NC_007951  Bxe_A2653  putative type IV secretion system protein VirB5/TraF  36.36 
 
 		 237 aa  134  9.999999999999999e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.0243741  normal  1 
 
 
-
 
NC_010676  Bphyt_6502  P-type DNA transfer protein VirB5  36.04 
 
 		 231 aa  132  3e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A1758  putative type IV secretion system protein VirB5/TraF  35.68 
 
 		 231 aa  127  1.0000000000000001e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.291545  normal  0.256118 
 
 
-
 
NC_004578  PSPTO_0531  type IV secretion system protein, putative  33.97 
 
 		 254 aa  119  4.9999999999999996e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_010509  Mrad2831_6326  P-type DNA transfer protein VirB5  34.13 
 
 		 236 aa  114  2.0000000000000002e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal  1 
 
 
-
 
NC_008543  Bcen2424_3317  type IV secretion system family protein  30.97 
 
 		 235 aa  111  9e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010515  Bcenmc03_4198  P-type DNA transfer protein VirB5  31.11 
 
 		 236 aa  109  3e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.835189 
 
 
-
 
NC_004311  BRA0065  type IV secretion system protein VirB5  28.5 
 
 		 238 aa  97.4  2e-19  Brucella suis 1330  Bacteria  normal  0.0500304  n/a   
 
 
-
 
NC_011891  A2cp1_1139  P-type DNA transfer protein VirB5  34.57 
 
 		 231 aa  96.7  3e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009504  BOV_A0059  P-type DNA transfer protein VirB5  28.5 
 
 		 238 aa  92.8  4e-18  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_012792  Vapar_5817  type IV secretion system family protein  32.9 
 
 		 244 aa  87  2e-16  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_010627  Bphy_7533  type IV secretion system family protein  28.9 
 
 		 225 aa  70.5  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  0.0210387  normal  0.0576761 
 
 
-
 
NC_009508  Swit_5006  type IV secretion system family protein  27.27 
 
 		 238 aa  69.3  0.00000000005  Sphingomonas wittichii RW1  Bacteria  decreased coverage  0.000746811  normal  0.254693 
 
 
-
 
NC_008242  Meso_4345  type IV secretion system  25.49 
 
 		 231 aa  57.4  0.0000002  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_0678  P-type DNA transfer protein VirB5  23.11 
 
 		 232 aa  55.8  0.0000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.511281  n/a   
 
 
-
 
NC_010679  Bphyt_7348  type IV secretion system family protein  25.58 
 
 		 234 aa  48.5  0.00008  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.260808 
 
 
-
 
NC_009955  Dshi_3644  hypothetical protein  24.68 
 
 		 269 aa  43.1  0.003  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  0.065926 
 
 
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