21 homologs were found in PanDaTox collection
for query gene Bxe_C0452 on replicon NC_007953
Organism: Burkholderia xenovorans LB400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007953  Bxe_C0452  putative type IV secretion system protein VirB5/TraF  100 
 
 
235 aa  475  1e-133  Burkholderia xenovorans LB400  Bacteria  normal  0.385252  normal 
 
 
-
 
NC_010681  Bphyt_0165  P-type DNA transfer protein VirB5  88.19 
 
 
236 aa  414  9.999999999999999e-116  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.572956 
 
 
-
 
NC_007951  Bxe_A2653  putative type IV secretion system protein VirB5/TraF  81.69 
 
 
237 aa  364  1e-100  Burkholderia xenovorans LB400  Bacteria  normal  0.0243741  normal 
 
 
-
 
NC_010676  Bphyt_6502  P-type DNA transfer protein VirB5  77.63 
 
 
231 aa  367  1e-100  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1758  putative type IV secretion system protein VirB5/TraF  79.25 
 
 
231 aa  353  1e-96  Burkholderia xenovorans LB400  Bacteria  normal  0.291545  normal  0.256118 
 
 
-
 
NC_010515  Bcenmc03_4198  P-type DNA transfer protein VirB5  67.4 
 
 
236 aa  317  9e-86  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.835189 
 
 
-
 
NC_008543  Bcen2424_3317  type IV secretion system family protein  66.52 
 
 
235 aa  314  8e-85  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0065  type IV secretion system protein VirB5  33.2 
 
 
238 aa  142  4e-33  Brucella suis 1330  Bacteria  normal  0.0500304  n/a   
 
 
-
 
NC_009504  BOV_A0059  P-type DNA transfer protein VirB5  33.2 
 
 
238 aa  140  1.9999999999999998e-32  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1139  P-type DNA transfer protein VirB5  38.3 
 
 
231 aa  138  6e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0867  type IV secretion system family protein  37.2 
 
 
238 aa  135  4e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_004578  PSPTO_0531  type IV secretion system protein, putative  39.67 
 
 
254 aa  134  9.999999999999999e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010509  Mrad2831_6326  P-type DNA transfer protein VirB5  38.42 
 
 
236 aa  134  9.999999999999999e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_010627  Bphy_7533  type IV secretion system family protein  33.87 
 
 
225 aa  86.7  3e-16  Burkholderia phymatum STM815  Bacteria  normal  0.0210387  normal  0.0576761 
 
 
-
 
NC_012792  Vapar_5817  type IV secretion system family protein  29.07 
 
 
244 aa  78.2  0.0000000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008242  Meso_4345  type IV secretion system  27.27 
 
 
231 aa  71.2  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010679  Bphyt_7348  type IV secretion system family protein  30.23 
 
 
234 aa  62.4  0.000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.260808 
 
 
-
 
NC_009667  Oant_0678  P-type DNA transfer protein VirB5  23.38 
 
 
232 aa  60.5  0.00000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.511281  n/a   
 
 
-
 
NC_009717  Xaut_5085  P-type DNA transfer protein VirB5  25.37 
 
 
231 aa  53.1  0.000004  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.997151 
 
 
-
 
NC_009432  Rsph17025_4375  type IV secretion system family protein  23.3 
 
 
239 aa  51.6  0.00001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.669124 
 
 
-
 
NC_009508  Swit_5006  type IV secretion system family protein  22.81 
 
 
238 aa  49.7  0.00004  Sphingomonas wittichii RW1  Bacteria  decreased coverage  0.000746811  normal  0.254693 
 
 
-
 
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