Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5817 |
Symbol | |
ID | 7974938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 522574 |
End bp | 523308 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644796398 |
Product | type IV secretion system family protein |
Protein accession | YP_002947672 |
Protein GI | 239820487 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02791] P-type DNA transfer protein VirB5 |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTAGAT TCCTTGTTGC CCTCTTCCTC GCGGCCACAG CCTCGCTCGC ACCGCCGCAC GCGAAAGCCG GGATCCCGGT GATCGACATC ACGGCCGTCG CCAACCTGAT ACAGCAGGTC ATGTACTGGC AGCAGCAAAT CTCCGGGATG CAGAAGCAGT ACGACCAGCT GAAGGAATCG AAGGACCAGC TGACCCGGAC CCACAACGCC ATGACGGGAA GCCGAGGCAT GGAGCAGCTG CTGCCGACCC CGGACCTCGC ACGCAACTAC CTGCCTCCCA GCTATGGCGA ACTGATGGGC ACGCTCAACG GCTCGTCGGC CAGTTATGCC GGGCTGGCCA GCCAAGTCCA GTCGATCATG AAAGCCAACA GCGTCCTCTC GGGAACCCAG TTGGAGGGGC TGAGTCCGGA GTTGCGCCAG GTCGTCGAGC AAGGACGGCA ATCGGCAGCG CTGCTCAACG GAATGACCCA GAACGCGTAC CAGAACACCA GCCAGCGCTT CTCGGCCCTG CAACTGCTGA TCGACCGCAT CGCTTCCGCA CAGGATCCCA AGGCGATCCA GGACCTGCAG GCAAGAATCC AGGCCGAGCA GAACATGCTC ACCAATGAGC AAACGAAGCT GCAGAGCCTT TATCAAGTCG CTCATTCTGA GGAGCTCATG CGCAAACAGC GCGCGCGAGA ACAAGCTGCC TCGGGCATAG GTTCTATGCG ATCGCTCCCC GCTGTCGACT ACTAG
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Protein sequence | MRRFLVALFL AATASLAPPH AKAGIPVIDI TAVANLIQQV MYWQQQISGM QKQYDQLKES KDQLTRTHNA MTGSRGMEQL LPTPDLARNY LPPSYGELMG TLNGSSASYA GLASQVQSIM KANSVLSGTQ LEGLSPELRQ VVEQGRQSAA LLNGMTQNAY QNTSQRFSAL QLLIDRIASA QDPKAIQDLQ ARIQAEQNML TNEQTKLQSL YQVAHSEELM RKQRAREQAA SGIGSMRSLP AVDY
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