| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5006 |
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| Symbol | |
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| ID | 5195953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 123607 |
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| End bp | 124323 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640579441 |
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| Product | type IV secretion system family protein |
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| Protein accession | YP_001260389 |
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| Protein GI | 148550959 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02791] P-type DNA transfer protein VirB5 |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 0.000746811 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.254693 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGCAA TTCGAGCGCT GGCGGTTGTC GGCGGATTGG CGATCTCGGT GCCGGCGTTC
GCGCAGGGCA TCCCGGTCTA TGATTCCAGC ACGTTCCTGC AGACCCTCTC GACGGTGAAG
AACACCCTGT CGATGATCGA ACAGGGAAAG CAGCAGATTT CCCAGGCCAC CGACATGTTC
AACAGCGTCA ACAAGCTGAC GAACGTCAAT CAGATTGCCT CGTCTCTGAA CACCGACGCC
GTTCGCCACC TCTTGCCAAG CGAAGCACGG GACATTCAGC GCCTTATGTC TTCGGACACG
ACAGGCCTCG GCAGTCTTGG ATCTTCCGCA GATCGGATTC GCAGCAACTA CCGGGTCGAT
CTTCCTGCGC TCCGCCCTGA CGCGACCGCT TTCGAGCGTT CAAGCCGCGA TTCCATTTCC
CGCAATGGCG AAATGGCGGC GCGTGACGCG GCGATTGCCG AGGCAGCATA TGGCGTCACC
GCCCAGAGAA CGACGGGTCT CGAGGAACTG CGTTCGTCGC TGGACACCGC GTCTGACGCG
AAGGACGTGA TGGATATCCA AGCCCGTGTT GGCGTGGAAA ATGCACACAT CCAGAACGAT
GCGGTCCAGC TTCAGGCGCT TCAGATGCGG CAGACCGCCG AGGCGAGATT GCGTTCGCAG
CGAGATGACG AGACCGGCCT CGCCAAGCTT CAGCAGAGCT TGAGTAGCCG GCCGTGA
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| Protein sequence | MRAIRALAVV GGLAISVPAF AQGIPVYDSS TFLQTLSTVK NTLSMIEQGK QQISQATDMF
NSVNKLTNVN QIASSLNTDA VRHLLPSEAR DIQRLMSSDT TGLGSLGSSA DRIRSNYRVD
LPALRPDATA FERSSRDSIS RNGEMAARDA AIAEAAYGVT AQRTTGLEEL RSSLDTASDA
KDVMDIQARV GVENAHIQND AVQLQALQMR QTAEARLRSQ RDDETGLAKL QQSLSSRP
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