Gene Lcho_0867 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0867 
Symbol 
ID6161704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp932385 
End bp933101 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content67% 
IMG OID641663617 
Producttype IV secretion system family protein 
Protein accessionYP_001789904 
Protein GI171057555 
COG category 
COG ID 
TIGRFAM ID[TIGR02780] P-type conjugative transfer protein TrbJ 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTTC ATTGCCAGAT CCGTCGCCAG ATCGTTGCCG CCGCACTGGG TGCCCTCGGC 
GCCTTCGGGG TCACCCCCAG CCAGGCCCAG GGCATCCCGG TGATCGACGT CGCCAACCTG
GTCCAGACCG TCCAGCAGGT GGTCAACGAC ATCACCGCGA TCGGCAACCA GGTCCAGCAG
ATCATGCAGC TGCAGAGCCA GCTCAACAGC ATCAACGGGA TTCGCAGCCT CGGTGCCATC
TTCGACAACC CGCTGCTGGG CAACTACGTG CCGGCCGAGG TCTACACCCA GCTCAACGCG
ATCGACCTGT CGGGCTATGC CGCGCTCAGC CGCACCGCCA AGTCGCTGCG CGACGCCGGC
ATGGTCTACA ACTGCCTGGA CCTGGGCGGC GACGCCAAGG CGCGCTGCCA GACCACCTTG
TCACAGCCCT ATCAGCACAA GGGCCTGCTG CAGGACGCGA TGCAGTCGGC CGCCGGCCGA
CTCTCGCAGA TCCAGGCCCT GATGGGCCAG GTCAACGCGA CCACCGACCA GAAGTCGGTG
CAGGAGGTCC AGGCTCGCAT CGGCGCCGAG AACGCGCTGC TGTCTCACGA GATGTCGCAG
CTGCAGATGC TGCAGGGCAT GGCCGACAGC GAGGAGCGCA TCGCCCGGGC CCGCGACCGG
GAACATCAGT ACGAGATGCT GGGACGCACG GGCAAGGTCT CGGACTTCCT GCCCTGA
 
Protein sequence
MRFHCQIRRQ IVAAALGALG AFGVTPSQAQ GIPVIDVANL VQTVQQVVND ITAIGNQVQQ 
IMQLQSQLNS INGIRSLGAI FDNPLLGNYV PAEVYTQLNA IDLSGYAALS RTAKSLRDAG
MVYNCLDLGG DAKARCQTTL SQPYQHKGLL QDAMQSAAGR LSQIQALMGQ VNATTDQKSV
QEVQARIGAE NALLSHEMSQ LQMLQGMADS EERIARARDR EHQYEMLGRT GKVSDFLP