Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0867 |
Symbol | |
ID | 6161704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 932385 |
End bp | 933101 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663617 |
Product | type IV secretion system family protein |
Protein accession | YP_001789904 |
Protein GI | 171057555 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTTTC ATTGCCAGAT CCGTCGCCAG ATCGTTGCCG CCGCACTGGG TGCCCTCGGC GCCTTCGGGG TCACCCCCAG CCAGGCCCAG GGCATCCCGG TGATCGACGT CGCCAACCTG GTCCAGACCG TCCAGCAGGT GGTCAACGAC ATCACCGCGA TCGGCAACCA GGTCCAGCAG ATCATGCAGC TGCAGAGCCA GCTCAACAGC ATCAACGGGA TTCGCAGCCT CGGTGCCATC TTCGACAACC CGCTGCTGGG CAACTACGTG CCGGCCGAGG TCTACACCCA GCTCAACGCG ATCGACCTGT CGGGCTATGC CGCGCTCAGC CGCACCGCCA AGTCGCTGCG CGACGCCGGC ATGGTCTACA ACTGCCTGGA CCTGGGCGGC GACGCCAAGG CGCGCTGCCA GACCACCTTG TCACAGCCCT ATCAGCACAA GGGCCTGCTG CAGGACGCGA TGCAGTCGGC CGCCGGCCGA CTCTCGCAGA TCCAGGCCCT GATGGGCCAG GTCAACGCGA CCACCGACCA GAAGTCGGTG CAGGAGGTCC AGGCTCGCAT CGGCGCCGAG AACGCGCTGC TGTCTCACGA GATGTCGCAG CTGCAGATGC TGCAGGGCAT GGCCGACAGC GAGGAGCGCA TCGCCCGGGC CCGCGACCGG GAACATCAGT ACGAGATGCT GGGACGCACG GGCAAGGTCT CGGACTTCCT GCCCTGA
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Protein sequence | MRFHCQIRRQ IVAAALGALG AFGVTPSQAQ GIPVIDVANL VQTVQQVVND ITAIGNQVQQ IMQLQSQLNS INGIRSLGAI FDNPLLGNYV PAEVYTQLNA IDLSGYAALS RTAKSLRDAG MVYNCLDLGG DAKARCQTTL SQPYQHKGLL QDAMQSAAGR LSQIQALMGQ VNATTDQKSV QEVQARIGAE NALLSHEMSQ LQMLQGMADS EERIARARDR EHQYEMLGRT GKVSDFLP
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