198 homologs were found in PanDaTox collection
for query gene Franean1_5809 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_5809  LuxR family transcriptional regulator  100 
 
 
57 aa  113  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.37  normal  0.987085 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  60 
 
 
218 aa  69.7  0.00000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  54.39 
 
 
211 aa  68.2  0.00000000003  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  56.14 
 
 
214 aa  68.2  0.00000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  54.39 
 
 
214 aa  68.2  0.00000000004  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  54.39 
 
 
214 aa  68.2  0.00000000004  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_009921  Franean1_0551  LuxR family transcriptional regulator  59.65 
 
 
76 aa  67.4  0.00000000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  63.16 
 
 
221 aa  67  0.00000000008  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  57.89 
 
 
217 aa  66.2  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.39 
 
 
217 aa  66.6  0.0000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  59.65 
 
 
219 aa  65.5  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  60 
 
 
209 aa  64.7  0.0000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  56.36 
 
 
218 aa  64.7  0.0000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  56.14 
 
 
215 aa  64.3  0.0000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  58.93 
 
 
216 aa  63.9  0.0000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  58.93 
 
 
223 aa  63.5  0.0000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  56.14 
 
 
219 aa  62.8  0.000000001  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  55.56 
 
 
213 aa  63.2  0.000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  56.36 
 
 
214 aa  63.2  0.000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  61.4 
 
 
215 aa  63.2  0.000000001  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  56.14 
 
 
220 aa  62.8  0.000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  55.36 
 
 
218 aa  61.6  0.000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  57.41 
 
 
218 aa  61.2  0.000000004  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  58.93 
 
 
239 aa  60.5  0.000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  58.93 
 
 
213 aa  60.8  0.000000007  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  58.18 
 
 
218 aa  60.1  0.00000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  56.14 
 
 
213 aa  60.1  0.00000001  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  56.14 
 
 
218 aa  59.3  0.00000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  61.82 
 
 
242 aa  58.9  0.00000002  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  54.55 
 
 
213 aa  58.9  0.00000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  52.63 
 
 
212 aa  58.2  0.00000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.55 
 
 
226 aa  58.5  0.00000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  56.6 
 
 
229 aa  58.5  0.00000003  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  57.14 
 
 
215 aa  58.2  0.00000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  54.39 
 
 
220 aa  57.8  0.00000004  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  50.88 
 
 
218 aa  58.2  0.00000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  59.65 
 
 
218 aa  57.8  0.00000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  51.79 
 
 
213 aa  57.8  0.00000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  52.73 
 
 
215 aa  57.8  0.00000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  50.88 
 
 
216 aa  57.4  0.00000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  50.88 
 
 
214 aa  57.4  0.00000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  54.55 
 
 
214 aa  57.4  0.00000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  56.6 
 
 
239 aa  57  0.00000008  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  51.79 
 
 
215 aa  57  0.00000009  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  52.63 
 
 
257 aa  56.6  0.0000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  52.63 
 
 
221 aa  56.6  0.0000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  54.39 
 
 
213 aa  56.6  0.0000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  50.88 
 
 
223 aa  55.5  0.0000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  50.91 
 
 
215 aa  55.8  0.0000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  52.73 
 
 
212 aa  55.8  0.0000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  52.73 
 
 
220 aa  55.8  0.0000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  49.12 
 
 
215 aa  55.8  0.0000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  57.14 
 
 
216 aa  55.8  0.0000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  54.39 
 
 
228 aa  55.1  0.0000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  50.88 
 
 
214 aa  55.1  0.0000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  54.72 
 
 
226 aa  54.7  0.0000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_012669  Bcav_0363  transcriptional regulator, LuxR family  50 
 
 
235 aa  54.7  0.0000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  52.73 
 
 
216 aa  54.7  0.0000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  50.88 
 
 
218 aa  54.3  0.0000005  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  49.12 
 
 
225 aa  54.3  0.0000005  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  50.91 
 
 
217 aa  54.3  0.0000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  51.79 
 
 
221 aa  53.9  0.0000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  50.88 
 
 
214 aa  53.9  0.0000008  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  50 
 
 
224 aa  53.5  0.0000009  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  50.88 
 
 
209 aa  53.1  0.000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  52.63 
 
 
233 aa  52.4  0.000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  50.91 
 
 
226 aa  52.4  0.000002  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  47.37 
 
 
220 aa  52  0.000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  48.15 
 
 
228 aa  51.2  0.000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  49.09 
 
 
222 aa  51.6  0.000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  49.12 
 
 
215 aa  51.2  0.000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  47.27 
 
 
214 aa  51.2  0.000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  50.91 
 
 
214 aa  51.2  0.000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  49.09 
 
 
219 aa  50.8  0.000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  50 
 
 
215 aa  50.1  0.00001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013595  Sros_0220  response regulator receiver protein  49.12 
 
 
241 aa  50.1  0.00001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  45.61 
 
 
243 aa  50.1  0.00001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  45.61 
 
 
214 aa  49.7  0.00001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  47.37 
 
 
213 aa  49.7  0.00001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  52.63 
 
 
210 aa  49.3  0.00002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  49.12 
 
 
214 aa  49.3  0.00002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  47.27 
 
 
214 aa  48.1  0.00003  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.43 
 
 
211 aa  48.5  0.00003  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  43.64 
 
 
215 aa  47.8  0.00005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  49.12 
 
 
235 aa  47.4  0.00007  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  49.09 
 
 
208 aa  47.4  0.00007  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  47.27 
 
 
214 aa  47.4  0.00007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_013061  Phep_2289  regulatory protein LuxR  36.36 
 
 
151 aa  47  0.00008  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.00301716 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  46.43 
 
 
217 aa  46.2  0.0001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_013525  Tter_0530  transcriptional regulator, LuxR family  55.56 
 
 
217 aa  47  0.0001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  53.85 
 
 
234 aa  46.6  0.0001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  50.98 
 
 
214 aa  45.8  0.0002  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_011886  Achl_3561  transcriptional regulator, LuxR family  60 
 
 
908 aa  45.4  0.0002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  47.37 
 
 
218 aa  45.1  0.0003  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  47.37 
 
 
221 aa  44.7  0.0004  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_009253  Dred_0925  response regulator receiver protein  50 
 
 
119 aa  45.1  0.0004  Desulfotomaculum reducens MI-1  Bacteria  normal  0.592282  n/a   
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  57.89 
 
 
221 aa  44.7  0.0004  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_008699  Noca_1318  response regulator receiver  57.14 
 
 
225 aa  44.3  0.0005  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1986  two component transcriptional regulator, LuxR family  51.43 
 
 
226 aa  44.7  0.0005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  55.26 
 
 
217 aa  44.3  0.0005  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
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