More than 300 homologs were found in PanDaTox collection
for query gene Amir_4689 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_4689  two component transcriptional regulator, LuxR family  100 
 
 
216 aa  409  1e-113  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1992  two component transcriptional regulator, LuxR family  77.36 
 
 
218 aa  304  5.0000000000000004e-82  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2250  two component transcriptional regulator, LuxR family  70.83 
 
 
217 aa  295  5e-79  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137071 
 
 
-
 
NC_009664  Krad_4020  two component transcriptional regulator, LuxR family  80.09 
 
 
215 aa  273  1.0000000000000001e-72  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.000894251  normal  0.0789775 
 
 
-
 
NC_013947  Snas_2641  two component transcriptional regulator, LuxR family  64.02 
 
 
220 aa  238  5e-62  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.53526  normal 
 
 
-
 
NC_013595  Sros_1653  response regulator receiver protein  60.85 
 
 
220 aa  236  2e-61  Streptosporangium roseum DSM 43021  Bacteria  normal  0.799733  normal 
 
 
-
 
NC_013131  Caci_0610  two component transcriptional regulator, LuxR family  58.14 
 
 
215 aa  228  7e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.440854 
 
 
-
 
NC_013510  Tcur_3933  two component transcriptional regulator, LuxR family  59.43 
 
 
218 aa  227  8e-59  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3908  two component transcriptional regulator, LuxR family  57.48 
 
 
214 aa  227  1e-58  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2300  response regulator receiver protein  58.22 
 
 
213 aa  226  2e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0423  two component LuxR family transcriptional regulator  59.81 
 
 
213 aa  225  4e-58  Salinispora arenicola CNS-205  Bacteria  normal  0.450903  hitchhiker  0.0058743 
 
 
-
 
NC_013595  Sros_2506  response regulator receiver protein  56.81 
 
 
223 aa  225  4e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.189025  normal  0.663488 
 
 
-
 
NC_013739  Cwoe_3717  two component transcriptional regulator, LuxR family  58.02 
 
 
217 aa  224  7e-58  Conexibacter woesei DSM 14684  Bacteria  normal  0.82478  normal 
 
 
-
 
NC_013510  Tcur_4729  two component transcriptional regulator, LuxR family  58.22 
 
 
212 aa  224  7e-58  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0948  two component transcriptional regulator, LuxR family  58.02 
 
 
214 aa  224  1e-57  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3762  two component transcriptional regulator, LuxR family  58.26 
 
 
221 aa  224  1e-57  Conexibacter woesei DSM 14684  Bacteria  normal  0.355338  normal  0.813095 
 
 
-
 
NC_009921  Franean1_7246  two component LuxR family transcriptional regulator  57.55 
 
 
215 aa  222  4e-57  Frankia sp. EAN1pec  Bacteria  normal  normal  0.172833 
 
 
-
 
NC_013093  Amir_2757  two component transcriptional regulator, LuxR family  63.08 
 
 
214 aa  221  7e-57  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0593961  n/a   
 
 
-
 
NC_009380  Strop_0353  two component LuxR family transcriptional regulator  58.49 
 
 
213 aa  221  9e-57  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0198  two component transcriptional regulator, LuxR family  56.81 
 
 
218 aa  219  1.9999999999999999e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2758  response regulator receiver  54.38 
 
 
220 aa  219  1.9999999999999999e-56  Salinispora tropica CNB-440  Bacteria  normal  0.21835  normal  0.0217102 
 
 
-
 
NC_009664  Krad_3915  two component transcriptional regulator, LuxR family  57.48 
 
 
226 aa  219  3e-56  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.161295  normal  0.0598624 
 
 
-
 
NC_014210  Ndas_1960  two component transcriptional regulator, LuxR family  55.56 
 
 
215 aa  219  3e-56  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000329107  hitchhiker  0.00000396613 
 
 
-
 
NC_013131  Caci_1254  two component transcriptional regulator, LuxR family  57.55 
 
 
213 aa  217  1e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3545  LuxR family two component transcriptional regulator  58.22 
 
 
213 aa  216  2e-55  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.701363 
 
 
-
 
NC_013172  Bfae_12650  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.21 
 
 
217 aa  213  9.999999999999999e-55  Brachybacterium faecium DSM 4810  Bacteria  normal  0.129544  n/a   
 
 
-
 
NC_013595  Sros_4051  response regulator receiver protein  54.25 
 
 
214 aa  212  3.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.004601 
 
 
-
 
NC_013595  Sros_6197  response regulator receiver protein  57.87 
 
 
215 aa  212  3.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.376562  normal 
 
 
-
 
NC_013595  Sros_6137  response regulator receiver protein  58.96 
 
 
209 aa  211  5.999999999999999e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.633642  normal  0.13111 
 
 
-
 
NC_014210  Ndas_2092  two component transcriptional regulator, LuxR family  54.72 
 
 
216 aa  211  7.999999999999999e-54  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  59.05 
 
 
233 aa  210  1e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_008726  Mvan_0263  two component LuxR family transcriptional regulator  56.34 
 
 
214 aa  209  2e-53  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.103764 
 
 
-
 
NC_007333  Tfu_0330  LuxR response regulator receiver  55.4 
 
 
219 aa  208  6e-53  Thermobifida fusca YX  Bacteria  normal  0.673991  n/a   
 
 
-
 
NC_014210  Ndas_3517  two component transcriptional regulator, LuxR family  54.46 
 
 
214 aa  207  7e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.498529  normal 
 
 
-
 
NC_013093  Amir_2699  two component transcriptional regulator, LuxR family  52.8 
 
 
226 aa  207  8e-53  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000630711  n/a   
 
 
-
 
NC_013235  Namu_2928  two component transcriptional regulator, LuxR family  52.34 
 
 
243 aa  206  2e-52  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000012449  hitchhiker  0.0000084288 
 
 
-
 
NC_013131  Caci_4455  two component transcriptional regulator, LuxR family  58.6 
 
 
213 aa  205  3e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4416  response regulator receiver protein  57.94 
 
 
228 aa  205  5e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0335955 
 
 
-
 
NC_013510  Tcur_4661  two component transcriptional regulator, LuxR family  57.94 
 
 
220 aa  205  5e-52  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0636  two component transcriptional regulator, LuxR family  55.61 
 
 
214 aa  202  2e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.583432 
 
 
-
 
NC_013131  Caci_1917  two component transcriptional regulator, LuxR family  53.52 
 
 
215 aa  202  3e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0212  two component transcriptional regulator, LuxR family  56.68 
 
 
218 aa  201  8e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0307  two component transcriptional regulator, LuxR family  60.75 
 
 
214 aa  200  9.999999999999999e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.115356  normal  0.300779 
 
 
-
 
NC_013235  Namu_3862  two component transcriptional regulator, LuxR family  52.8 
 
 
213 aa  201  9.999999999999999e-51  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00236143  normal 
 
 
-
 
NC_009921  Franean1_4332  two component LuxR family transcriptional regulator  56.54 
 
 
225 aa  200  9.999999999999999e-51  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00650273  normal 
 
 
-
 
NC_013947  Snas_2341  two component transcriptional regulator, LuxR family  52.09 
 
 
215 aa  199  1.9999999999999998e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5645  two component transcriptional regulator, LuxR family  52.58 
 
 
215 aa  199  3e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.117498 
 
 
-
 
NC_014151  Cfla_3103  two component transcriptional regulator, LuxR family  58.26 
 
 
223 aa  198  5e-50  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156187  hitchhiker  0.000316121 
 
 
-
 
NC_012669  Bcav_1359  two component transcriptional regulator, LuxR family  52.97 
 
 
219 aa  198  5e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.323671 
 
 
-
 
NC_013595  Sros_9330  response regulator receiver protein  54.42 
 
 
221 aa  198  6e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.603744 
 
 
-
 
NC_013947  Snas_4725  two component transcriptional regulator, LuxR family  55.4 
 
 
218 aa  197  1.0000000000000001e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.37253  normal 
 
 
-
 
NC_009664  Krad_3331  two component transcriptional regulator, LuxR family  56.6 
 
 
216 aa  197  1.0000000000000001e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0226882  normal  0.21338 
 
 
-
 
NC_013757  Gobs_2541  two component transcriptional regulator, LuxR family  47.91 
 
 
215 aa  196  2.0000000000000003e-49  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.92112  n/a   
 
 
-
 
NC_013739  Cwoe_2389  two component transcriptional regulator, LuxR family  51.64 
 
 
215 aa  196  3e-49  Conexibacter woesei DSM 14684  Bacteria  normal  0.205007  decreased coverage  0.00115827 
 
 
-
 
NC_008705  Mkms_3983  two component LuxR family transcriptional regulator  51.87 
 
 
214 aa  196  3e-49  Mycobacterium sp. KMS  Bacteria  normal  0.714996  normal 
 
 
-
 
NC_009077  Mjls_3924  two component LuxR family transcriptional regulator  51.87 
 
 
214 aa  196  3e-49  Mycobacterium sp. JLS  Bacteria  normal  normal  0.278782 
 
 
-
 
NC_014210  Ndas_2133  two component transcriptional regulator, LuxR family  56.13 
 
 
214 aa  195  5.000000000000001e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_17580  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  55.19 
 
 
211 aa  194  6e-49  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0315732  normal  0.450672 
 
 
-
 
NC_013131  Caci_0203  two component transcriptional regulator, LuxR family  49.06 
 
 
218 aa  194  6e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2280  two component LuxR family transcriptional regulator  51.87 
 
 
214 aa  191  5e-48  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.92337  normal  0.457915 
 
 
-
 
NC_013521  Sked_09230  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.15 
 
 
218 aa  191  9e-48  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.310613 
 
 
-
 
NC_013235  Namu_0810  two component transcriptional regulator, LuxR family  49.32 
 
 
219 aa  190  1e-47  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0968  two component LuxR family transcriptional regulator  49.77 
 
 
220 aa  189  2.9999999999999997e-47  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3909  two component LuxR family transcriptional regulator  50.71 
 
 
211 aa  188  5e-47  Mycobacterium sp. MCS  Bacteria  normal  0.755905  n/a   
 
 
-
 
NC_009921  Franean1_2299  two component LuxR family transcriptional regulator  53.08 
 
 
242 aa  186  2e-46  Frankia sp. EAN1pec  Bacteria  normal  0.0379402  normal 
 
 
-
 
NC_008726  Mvan_2073  two component LuxR family transcriptional regulator  48.6 
 
 
217 aa  186  3e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.776481 
 
 
-
 
NC_008726  Mvan_4386  two component LuxR family transcriptional regulator  51.66 
 
 
209 aa  186  3e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_35890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.38 
 
 
239 aa  186  3e-46  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479689 
 
 
-
 
NC_013595  Sros_8722  response regulator receiver protein  50 
 
 
210 aa  185  4e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5906  two component LuxR family transcriptional regulator  50.23 
 
 
228 aa  185  4e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.363446  normal 
 
 
-
 
NC_013739  Cwoe_4605  two component transcriptional regulator, LuxR family  52.11 
 
 
222 aa  184  8e-46  Conexibacter woesei DSM 14684  Bacteria  normal  0.554224  normal 
 
 
-
 
NC_013530  Xcel_0244  two component transcriptional regulator, LuxR family  48.84 
 
 
216 aa  182  3e-45  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0972  two component transcriptional regulator, LuxR family  52.36 
 
 
208 aa  181  6e-45  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3050  two component transcriptional regulator, LuxR family  47.17 
 
 
214 aa  177  9e-44  Conexibacter woesei DSM 14684  Bacteria  normal  0.127757  normal 
 
 
-
 
NC_008541  Arth_3490  two component LuxR family transcriptional regulator  52.58 
 
 
218 aa  177  1e-43  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6494  two component LuxR family transcriptional regulator  47.49 
 
 
235 aa  176  2e-43  Frankia sp. EAN1pec  Bacteria  normal  0.0149487  normal  0.504125 
 
 
-
 
NC_013093  Amir_0530  two component transcriptional regulator, LuxR family  52.11 
 
 
214 aa  176  2e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0201422  n/a   
 
 
-
 
NC_013739  Cwoe_0320  two component transcriptional regulator, LuxR family  49.06 
 
 
218 aa  176  2e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.308686  normal  0.0930841 
 
 
-
 
NC_013530  Xcel_2524  two component transcriptional regulator, LuxR family  53 
 
 
228 aa  175  6e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0516799  n/a   
 
 
-
 
NC_013172  Bfae_11890  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.7 
 
 
213 aa  173  1.9999999999999998e-42  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_7225  two component LuxR family transcriptional regulator  46.73 
 
 
229 aa  173  1.9999999999999998e-42  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1460  two component transcriptional regulator, LuxR family  46.73 
 
 
224 aa  171  5e-42  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.659068  n/a   
 
 
-
 
NC_013235  Namu_3029  two component transcriptional regulator, LuxR family  46.26 
 
 
815 aa  168  5e-41  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00871852  hitchhiker  0.00628617 
 
 
-
 
NC_013595  Sros_3199  response regulator receiver protein  49.76 
 
 
212 aa  163  2.0000000000000002e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6700  two component LuxR family transcriptional regulator  47.93 
 
 
257 aa  162  5.0000000000000005e-39  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5165  two component transcriptional regulator, LuxR family  43.66 
 
 
214 aa  159  2e-38  Conexibacter woesei DSM 14684  Bacteria  normal  0.852017  normal 
 
 
-
 
NC_013235  Namu_1746  two component transcriptional regulator, LuxR family  47.95 
 
 
222 aa  159  3e-38  Nakamurella multipartita DSM 44233  Bacteria  normal  0.139209  normal  0.0305301 
 
 
-
 
NC_009921  Franean1_0340  two component LuxR family transcriptional regulator  45.75 
 
 
221 aa  158  5e-38  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0115466 
 
 
-
 
NC_009921  Franean1_2504  two component LuxR family transcriptional regulator  42.59 
 
 
218 aa  157  1e-37  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00866313  normal 
 
 
-
 
NC_013739  Cwoe_0318  two component transcriptional regulator, LuxR family  47.27 
 
 
221 aa  150  1e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.29485  normal  0.172489 
 
 
-
 
NC_013169  Ksed_07220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.86 
 
 
226 aa  149  4e-35  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.740026 
 
 
-
 
NC_007777  Francci3_0084  two component LuxR family transcriptional regulator  44.34 
 
 
239 aa  142  5e-33  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1501  two component transcriptional regulator, LuxR family  43.26 
 
 
228 aa  141  6e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.138703 
 
 
-
 
NC_013595  Sros_0503  response regulator receiver protein  42.27 
 
 
226 aa  131  7.999999999999999e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.544154  normal 
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  36.95 
 
 
218 aa  112  6e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  37.2 
 
 
225 aa  107  1e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  35.09 
 
 
218 aa  105  4e-22  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  33.33 
 
 
219 aa  103  2e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_002967  TDE0149  DNA-binding response regulator  29.08 
 
 
201 aa  101  9e-21  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  34.09 
 
 
224 aa  100  2e-20  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
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