More than 300 homologs were found in PanDaTox collection
for query gene Sfum_1430 on replicon NC_008554
Organism: Syntrophobacter fumaroxidans MPOB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008554  Sfum_1430  histone family protein DNA-binding protein  100 
 
 
90 aa  173  5e-43  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000153062  normal  0.144736 
 
 
-
 
NC_008554  Sfum_2107  histone family protein DNA-binding protein  65.56 
 
 
90 aa  120  7e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00000844989  hitchhiker  0.00906741 
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  56.67 
 
 
90 aa  107  8.000000000000001e-23  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  59.55 
 
 
91 aa  105  2e-22  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_013173  Dbac_2463  histone family protein DNA-binding protein  56.67 
 
 
90 aa  104  4e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0228112  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  57.3 
 
 
90 aa  103  1e-21  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  56.18 
 
 
91 aa  102  2e-21  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  55.06 
 
 
91 aa  102  2e-21  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  58.43 
 
 
96 aa  101  3e-21  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_007519  Dde_2058  histone-like DNA-binding protein  55.56 
 
 
90 aa  101  3e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.954956  n/a   
 
 
-
 
NC_012034  Athe_2511  histone family protein DNA-binding protein  52.81 
 
 
92 aa  101  3e-21  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000006954  n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_010831  Cphamn1_0324  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.064189  normal  0.0110025 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  56.18 
 
 
90 aa  101  3e-21  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011883  Ddes_1090  histone family protein DNA-binding protein  55.06 
 
 
90 aa  101  4e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  56.04 
 
 
91 aa  100  4e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  57.78 
 
 
90 aa  100  5e-21  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  55.56 
 
 
91 aa  100  5e-21  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_014230  CA2559_09623  probable DNA-binding protein HU  52.81 
 
 
90 aa  100  8e-21  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.355669  n/a   
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  51.69 
 
 
94 aa  100  9e-21  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  55.06 
 
 
90 aa  99.8  1e-20  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_011769  DvMF_0500  histone family protein DNA-binding protein  58.89 
 
 
90 aa  100  1e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000759527 
 
 
-
 
NC_011883  Ddes_0087  histone family protein DNA-binding protein  57.14 
 
 
91 aa  98.6  2e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2673  histone family protein DNA-binding protein  58.43 
 
 
91 aa  99  2e-20  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.156087  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  55.06 
 
 
90 aa  99  2e-20  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  52.22 
 
 
91 aa  98.6  2e-20  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  55.06 
 
 
91 aa  98.2  3e-20  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  55.06 
 
 
91 aa  98.6  3e-20  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  55.06 
 
 
94 aa  98.2  3e-20  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  52.81 
 
 
90 aa  98.2  4e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  56.18 
 
 
94 aa  97.4  5e-20  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  56.18 
 
 
94 aa  97.8  5e-20  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  53.33 
 
 
90 aa  97.1  7e-20  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  52.22 
 
 
96 aa  97.1  7e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  53.93 
 
 
90 aa  97.1  7e-20  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  50.56 
 
 
92 aa  97.1  7e-20  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  51.69 
 
 
91 aa  97.1  8e-20  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  53.93 
 
 
90 aa  96.7  9e-20  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  53.93 
 
 
90 aa  96.7  9e-20  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  51.69 
 
 
91 aa  96.7  9e-20  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_007514  Cag_0362  histone-like DNA-binding protein  53.93 
 
 
91 aa  95.9  1e-19  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0188  histone family protein DNA-binding protein  55.06 
 
 
94 aa  96.7  1e-19  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1918  histone family protein DNA-binding protein  56.98 
 
 
91 aa  96.3  1e-19  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000000897645  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  49.44 
 
 
91 aa  95.9  1e-19  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_012918  GM21_0170  histone family protein DNA-binding protein  55.06 
 
 
94 aa  96.7  1e-19  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000201093 
 
 
-
 
NC_010814  Glov_2215  histone family protein DNA-binding protein  56.32 
 
 
95 aa  96.3  1e-19  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000076232  n/a   
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  52.81 
 
 
91 aa  95.9  2e-19  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  50.56 
 
 
91 aa  95.5  2e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0765  nucleoid protein Hbs  52.27 
 
 
91 aa  95.5  2e-19  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000296782  n/a   
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  52.81 
 
 
95 aa  95.9  2e-19  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  53.93 
 
 
90 aa  95.1  3e-19  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  52.81 
 
 
90 aa  95.1  3e-19  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  50.56 
 
 
91 aa  94.7  3e-19  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_008751  Dvul_2207  histone family protein DNA-binding protein  54.95 
 
 
91 aa  94.7  4e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  0.976216  normal  0.483194 
 
 
-
 
NC_013162  Coch_1967  histone family protein DNA-binding protein  49.44 
 
 
92 aa  94.4  4e-19  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.00606172  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  51.69 
 
 
90 aa  94.4  5e-19  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94.4  5e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94.4  5e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_009943  Dole_1717  histone family protein DNA-binding protein  56.67 
 
 
90 aa  94  5e-19  Desulfococcus oleovorans Hxd3  Bacteria  unclonable  0.0000000000293556  n/a   
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94.4  5e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  48.89 
 
 
90 aa  94.4  5e-19  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94.4  5e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94.4  5e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  53.93 
 
 
90 aa  94  6e-19  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  53.93 
 
 
90 aa  94  6e-19  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94  6e-19  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  49.44 
 
 
90 aa  94  6e-19  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  53.93 
 
 
90 aa  94  6e-19  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94  6e-19  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94  6e-19  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94  6e-19  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  50 
 
 
92 aa  94  6e-19  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94  6e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  49.44 
 
 
90 aa  94  6e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  53.93 
 
 
90 aa  94  6e-19  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  50.56 
 
 
90 aa  93.6  7e-19  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  48.31 
 
 
90 aa  94  7e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  49.44 
 
 
92 aa  94  7e-19  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_012856  Rpic12D_3231  histone family protein DNA-binding protein  50 
 
 
92 aa  93.6  8e-19  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3555  histone family protein DNA-binding protein  50 
 
 
92 aa  93.6  8e-19  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_0238  histone family protein DNA-binding protein  48.89 
 
 
91 aa  93.6  9e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1362  histone-like DNA-binding protein  51.69 
 
 
90 aa  93.2  1e-18  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.102123  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  55.06 
 
 
90 aa  93.2  1e-18  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_003295  RSc3359  histone-like DNA-binding protein HU-beta (NS1)  48.89 
 
 
92 aa  92  2e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  52.81 
 
 
90 aa  92  2e-18  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_008740  Maqu_3758  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.4  2e-18  Marinobacter aquaeolei VT8  Bacteria  normal  0.639339  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  48.31 
 
 
90 aa  92  2e-18  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1275  histone family protein DNA-binding protein  51.69 
 
 
91 aa  92  2e-18  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000292942  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  53.93 
 
 
90 aa  92  2e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  52.27 
 
 
94 aa  92  2e-18  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2386  histone family protein DNA-binding protein  52.27 
 
 
94 aa  92  2e-18  Ralstonia pickettii 12D  Bacteria  normal  0.405821  normal 
 
 
-
 
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