More than 300 homologs were found in PanDaTox collection
for query gene Rru_A0729 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  100 
 
 
259 aa  516  1.0000000000000001e-145  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  49.21 
 
 
277 aa  223  3e-57  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  49.21 
 
 
277 aa  221  9.999999999999999e-57  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  48.13 
 
 
249 aa  210  2e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  46.96 
 
 
282 aa  203  2e-51  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  48.7 
 
 
256 aa  202  6e-51  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  45.97 
 
 
258 aa  201  9.999999999999999e-51  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  46.18 
 
 
265 aa  189  2.9999999999999997e-47  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  41.94 
 
 
256 aa  178  1e-43  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  43.16 
 
 
254 aa  177  2e-43  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  40.24 
 
 
258 aa  174  9e-43  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  43.6 
 
 
260 aa  173  2.9999999999999996e-42  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  40.32 
 
 
257 aa  172  5.999999999999999e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  40.51 
 
 
300 aa  168  9e-41  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  39 
 
 
261 aa  164  9e-40  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  40.93 
 
 
260 aa  162  4.0000000000000004e-39  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  41.04 
 
 
260 aa  161  8.000000000000001e-39  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  40.16 
 
 
264 aa  161  9e-39  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  41.04 
 
 
260 aa  161  1e-38  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  39.92 
 
 
263 aa  157  2e-37  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  43.32 
 
 
251 aa  157  2e-37  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  35.12 
 
 
243 aa  153  2.9999999999999998e-36  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  38.46 
 
 
250 aa  149  4e-35  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  39.66 
 
 
238 aa  148  9e-35  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  40.4 
 
 
250 aa  145  6e-34  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  36.08 
 
 
252 aa  143  3e-33  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  35.83 
 
 
262 aa  143  4e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  35.78 
 
 
239 aa  142  7e-33  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  38.98 
 
 
251 aa  140  1.9999999999999998e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  38.4 
 
 
253 aa  139  3e-32  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  37.17 
 
 
260 aa  139  4.999999999999999e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  40.25 
 
 
250 aa  137  2e-31  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  36.73 
 
 
262 aa  137  2e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  39.02 
 
 
264 aa  137  2e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  36.78 
 
 
240 aa  137  2e-31  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  34.57 
 
 
245 aa  136  4e-31  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  34.57 
 
 
245 aa  136  4e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  36.44 
 
 
240 aa  135  6.0000000000000005e-31  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  33.74 
 
 
245 aa  135  7.000000000000001e-31  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  39.42 
 
 
250 aa  135  8e-31  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  36.97 
 
 
240 aa  134  9.999999999999999e-31  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  38.62 
 
 
249 aa  134  1.9999999999999998e-30  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_009457  VC0395_A0637  short chain dehydrogenase  35.1 
 
 
241 aa  133  3e-30  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000368636  n/a   
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  35.1 
 
 
241 aa  132  6e-30  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  35.92 
 
 
241 aa  132  6.999999999999999e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  37.55 
 
 
266 aa  130  2.0000000000000002e-29  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0185  short chain dehydrogenase  33.07 
 
 
256 aa  129  4.0000000000000003e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  36.33 
 
 
239 aa  128  7.000000000000001e-29  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  37.65 
 
 
266 aa  127  2.0000000000000002e-28  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  37.5 
 
 
275 aa  127  2.0000000000000002e-28  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3382  short chain dehydrogenase/reductase family oxidoreductase  36.89 
 
 
266 aa  127  3e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  37.15 
 
 
266 aa  126  4.0000000000000003e-28  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  31.3 
 
 
238 aa  125  7e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  34.8 
 
 
261 aa  124  1e-27  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  34.8 
 
 
261 aa  124  1e-27  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  32.07 
 
 
242 aa  124  2e-27  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3209  short-chain dehydrogenase/reductase SDR  36.14 
 
 
266 aa  123  3e-27  Shewanella baltica OS195  Bacteria  normal  normal  0.857449 
 
 
-
 
NC_009076  BURPS1106A_0427  short chain dehydrogenase  33.46 
 
 
259 aa  123  3e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3066  short-chain dehydrogenase/reductase SDR  37.35 
 
 
266 aa  123  4e-27  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0087  short chain dehydrogenase  33.07 
 
 
259 aa  122  5e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2000  short chain dehydrogenase  33.07 
 
 
259 aa  122  5e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0589  short chain dehydrogenase  33.07 
 
 
259 aa  122  5e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3096  short chain dehydrogenase  33.07 
 
 
259 aa  122  5e-27  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1311  short-chain dehydrogenase/reductase SDR  36.14 
 
 
266 aa  122  5e-27  Shewanella baltica OS223  Bacteria  normal  normal  0.978372 
 
 
-
 
NC_009080  BMA10247_2288  short chain dehydrogenase  33.07 
 
 
259 aa  122  5e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0352  short chain dehydrogenase  33.07 
 
 
259 aa  122  7e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  34.26 
 
 
261 aa  122  8e-27  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0407  short chain dehydrogenase  32.68 
 
 
259 aa  122  8e-27  Burkholderia pseudomallei 668  Bacteria  normal  0.317505  n/a   
 
 
-
 
NC_010002  Daci_6048  short chain dehydrogenase  33.6 
 
 
266 aa  121  9e-27  Delftia acidovorans SPH-1  Bacteria  normal  0.549002  normal 
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  35.16 
 
 
267 aa  121  9.999999999999999e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3052  short-chain dehydrogenase/reductase SDR  36.14 
 
 
266 aa  121  9.999999999999999e-27  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  38.04 
 
 
256 aa  120  1.9999999999999998e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  30.38 
 
 
245 aa  120  1.9999999999999998e-26  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  34.01 
 
 
245 aa  119  4.9999999999999996e-26  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_007298  Daro_3863  short chain dehydrogenase  33.46 
 
 
260 aa  119  6e-26  Dechloromonas aromatica RCB  Bacteria  normal  0.331172  normal 
 
 
-
 
NC_003910  CPS_1382  short chain dehydrogenase/reductase family oxidoreductase  32.53 
 
 
251 aa  118  7.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_008542  Bcen2424_0780  short-chain dehydrogenase/reductase SDR  33.6 
 
 
251 aa  118  7.999999999999999e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  35.9 
 
 
238 aa  116  3.9999999999999997e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_010508  Bcenmc03_0749  short-chain dehydrogenase/reductase SDR  33.46 
 
 
261 aa  115  5e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  32.5 
 
 
264 aa  115  8.999999999999998e-25  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_007347  Reut_A0130  short chain dehydrogenase  31.18 
 
 
265 aa  114  2.0000000000000002e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.727225  n/a   
 
 
-
 
NC_007951  Bxe_A4248  short chain dehydrogenase  32.22 
 
 
259 aa  114  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.215124 
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  34.75 
 
 
270 aa  113  4.0000000000000004e-24  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3806  short chain dehydrogenase  33.74 
 
 
260 aa  113  4.0000000000000004e-24  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.187681 
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  34.36 
 
 
270 aa  112  4.0000000000000004e-24  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  30.5 
 
 
262 aa  112  7.000000000000001e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  30.5 
 
 
262 aa  112  7.000000000000001e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  30.5 
 
 
262 aa  112  7.000000000000001e-24  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  30.5 
 
 
262 aa  112  7.000000000000001e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  30.5 
 
 
262 aa  112  7.000000000000001e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  30.5 
 
 
262 aa  112  7.000000000000001e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1684  short-chain dehydrogenase/reductase SDR  35.26 
 
 
263 aa  111  1.0000000000000001e-23  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  32.02 
 
 
255 aa  110  2.0000000000000002e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1148  short-chain dehydrogenase/reductase SDR  36.56 
 
 
261 aa  110  2.0000000000000002e-23  Ralstonia pickettii 12J  Bacteria  normal  0.0372396  normal 
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  30.5 
 
 
262 aa  110  2.0000000000000002e-23  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_013730  Slin_0208  short-chain dehydrogenase/reductase SDR  31.47 
 
 
263 aa  110  2.0000000000000002e-23  Spirosoma linguale DSM 74  Bacteria  normal  0.196422  normal 
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  41.8 
 
 
260 aa  110  2.0000000000000002e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3312  short-chain dehydrogenase/reductase SDR  30 
 
 
260 aa  110  3e-23  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6265  short chain dehydrogenase  34.4 
 
 
257 aa  109  5e-23  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2834  short chain dehydrogenase  34 
 
 
257 aa  109  5e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.499263 
 
 
-
 
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