More than 300 homologs were found in PanDaTox collection
for query gene Rmet_0009 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_0009  binding-protein-dependent transport systems inner membrane component  100 
 
 
310 aa  600  1e-170  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1208  binding-protein-dependent transport systems inner membrane component  67.46 
 
 
314 aa  405  1.0000000000000001e-112  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3121  ABC sugar transporter, inner membrane subunit  57.53 
 
 
317 aa  333  3e-90  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3315  binding-protein-dependent transport systems inner membrane component  56.19 
 
 
314 aa  330  1e-89  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.453212  n/a   
 
 
-
 
NC_011145  AnaeK_3229  binding-protein-dependent transport systems inner membrane component  56.19 
 
 
314 aa  330  2e-89  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1663  binding-protein-dependent transport systems inner membrane component  59.86 
 
 
310 aa  328  8e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0803077  normal 
 
 
-
 
NC_009620  Smed_4329  binding-protein-dependent transport systems inner membrane component  39.31 
 
 
309 aa  205  9e-52  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0434884 
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
310 aa  202  8e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  37.59 
 
 
310 aa  201  1.9999999999999998e-50  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_009720  Xaut_0501  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
365 aa  197  1.0000000000000001e-49  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3645  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
318 aa  194  1e-48  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.415839 
 
 
-
 
NC_007778  RPB_2098  binding-protein-dependent transport systems inner membrane component  37.41 
 
 
317 aa  192  8e-48  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.529199  hitchhiker  0.000478367 
 
 
-
 
NC_009485  BBta_3555  putative ABC transporter permease protein  37.69 
 
 
317 aa  190  2.9999999999999997e-47  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.34254  normal 
 
 
-
 
NC_011004  Rpal_3959  binding-protein-dependent transport systems inner membrane component  37.69 
 
 
315 aa  189  5.999999999999999e-47  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2891  binding-protein-dependent transport systems inner membrane component  37.13 
 
 
318 aa  188  1e-46  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.400754  normal  0.350094 
 
 
-
 
NC_007958  RPD_3321  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
317 aa  185  1.0000000000000001e-45  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5641  normal 
 
 
-
 
NC_011894  Mnod_1414  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
314 aa  184  1.0000000000000001e-45  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  36.52 
 
 
296 aa  184  2.0000000000000003e-45  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_010511  M446_0821  binding-protein-dependent transport systems inner membrane component  37.59 
 
 
314 aa  179  7e-44  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
307 aa  175  8e-43  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_007948  Bpro_1259  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
300 aa  172  6.999999999999999e-42  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2547  binding-protein dependent transport system inner membrane protein  33.22 
 
 
312 aa  167  2.9999999999999998e-40  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.194318  normal 
 
 
-
 
NC_009485  BBta_4118  putative permease protein of sugar ABC transporter  35.47 
 
 
312 aa  165  8e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.15121  normal  0.31936 
 
 
-
 
NC_007958  RPD_2909  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
348 aa  164  2.0000000000000002e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.120786  normal  0.0549624 
 
 
-
 
NC_010623  Bphy_4058  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
309 aa  164  2.0000000000000002e-39  Burkholderia phymatum STM815  Bacteria  normal  normal  0.801646 
 
 
-
 
NC_010676  Bphyt_7207  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
296 aa  157  2e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0353  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
317 aa  157  2e-37  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0740262  n/a   
 
 
-
 
NC_007952  Bxe_B0419  ABC sugar transporter, inner membrane subunit  31.09 
 
 
296 aa  156  4e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_4929  binding-protein-dependent transport systems inner membrane component  35.76 
 
 
311 aa  156  4e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.155715  normal 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  36.14 
 
 
292 aa  155  6e-37  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
310 aa  155  8e-37  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7450  binding-protein-dependent transport systems inner membrane component  34.16 
 
 
316 aa  154  1e-36  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00790  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
262 aa  152  8e-36  Halothermothrix orenii H 168  Bacteria  normal  0.772214  n/a   
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  32.72 
 
 
320 aa  150  2e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
286 aa  150  3e-35  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  37.5 
 
 
280 aa  150  3e-35  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
328 aa  150  3e-35  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
330 aa  150  4e-35  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5851  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
311 aa  149  7e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.421015  normal 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  37.12 
 
 
286 aa  148  1.0000000000000001e-34  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  29.93 
 
 
312 aa  148  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_0187  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
307 aa  148  1.0000000000000001e-34  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
293 aa  146  3e-34  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_008699  Noca_1419  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
314 aa  147  3e-34  Nocardioides sp. JS614  Bacteria  normal  0.906597  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  32.3 
 
 
293 aa  146  4.0000000000000006e-34  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
324 aa  146  5e-34  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  38.12 
 
 
306 aa  146  5e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
NC_007005  Psyr_0761  binding-protein dependent transport system inner membrane protein  35.26 
 
 
320 aa  146  6e-34  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0629996  normal  0.824676 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
309 aa  145  6e-34  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  35.47 
 
 
304 aa  145  9e-34  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
307 aa  145  1e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
316 aa  145  1e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
316 aa  144  1e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
305 aa  144  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  34.74 
 
 
287 aa  143  4e-33  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
293 aa  143  4e-33  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
293 aa  143  4e-33  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
293 aa  143  4e-33  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_012858  Rleg_6764  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
326 aa  143  4e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_01820  permease component of ABC-type sugar transporter  31.25 
 
 
312 aa  143  4e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
316 aa  142  5e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
319 aa  142  5e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  29.84 
 
 
318 aa  142  5e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_013131  Caci_6903  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
324 aa  142  7e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0156181  normal  0.0141251 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
299 aa  142  8e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  29.47 
 
 
307 aa  142  9.999999999999999e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  29.47 
 
 
307 aa  142  9.999999999999999e-33  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  28.57 
 
 
317 aa  141  9.999999999999999e-33  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_013172  Bfae_29410  carbohydrate ABC transporter membrane protein  31.94 
 
 
322 aa  141  1.9999999999999998e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  0.899558  n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
318 aa  140  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  34.03 
 
 
435 aa  141  1.9999999999999998e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
299 aa  140  1.9999999999999998e-32  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
311 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
312 aa  140  3e-32  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  31.5 
 
 
306 aa  139  3.9999999999999997e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_011988  Avi_6238  ABC transporter membrane spanning protein (maltose)  33.45 
 
 
294 aa  139  4.999999999999999e-32  Agrobacterium vitis S4  Bacteria  normal  0.602267  n/a   
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  32.54 
 
 
299 aa  139  4.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_013172  Bfae_01490  carbohydrate ABC transporter membrane protein  33.33 
 
 
324 aa  139  6e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  0.659857  n/a   
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  30.03 
 
 
325 aa  139  7e-32  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  30.03 
 
 
325 aa  139  7.999999999999999e-32  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2421  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
311 aa  139  7.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.224374 
 
 
-
 
NC_004578  PSPTO_0888  sugar ABC transporter, permease protein  34.97 
 
 
320 aa  138  1e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.392731  n/a   
 
 
-
 
NC_013131  Caci_3596  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
325 aa  138  1e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.295531  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
313 aa  138  1e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_11550  carbohydrate ABC transporter membrane protein  31.82 
 
 
354 aa  137  2e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal  0.0144146 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
320 aa  137  2e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_012669  Bcav_2718  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
330 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.21265 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
310 aa  137  2e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_014165  Tbis_1885  binding-protein-dependent transporter inner membrane component  32.73 
 
 
317 aa  137  3.0000000000000003e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.44963 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
313 aa  136  4e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
292 aa  136  5e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5607  binding-protein-dependent transport systems inner membrane component  35.36 
 
 
292 aa  136  6.0000000000000005e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.153616  normal 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  29.8 
 
 
320 aa  135  6.0000000000000005e-31  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_009620  Smed_4397  binding-protein-dependent transport systems inner membrane component  36.69 
 
 
297 aa  135  8e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.439093 
 
 
-
 
NC_013923  Nmag_3872  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
315 aa  134  9.999999999999999e-31  Natrialba magadii ATCC 43099  Archaea  normal  0.0566045  n/a   
 
 
-
 
NC_009620  Smed_4642  binding-protein-dependent transport systems inner membrane component  31.07 
 
 
294 aa  135  9.999999999999999e-31  Sinorhizobium medicae WSM419  Bacteria  normal  0.288658  normal  0.0756683 
 
 
-
 
NC_013172  Bfae_29890  carbohydrate ABC transporter membrane protein  32.97 
 
 
333 aa  134  1.9999999999999998e-30  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2984  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
305 aa  134  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
328 aa  134  1.9999999999999998e-30  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_008243  Meso_4516  binding-protein-dependent transport systems inner membrane component  29.58 
 
 
290 aa  134  1.9999999999999998e-30  Chelativorans sp. BNC1  Bacteria  normal  0.0463372  n/a   
 
 
-
 
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